Difference between revisions of "ChIP-Seq peaks clusterization (analysis)"
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==== Parameters: ==== | ==== Parameters: ==== | ||
| − | * '''Input track''' – Select input ChIP-seq track | + | * '''Input track''' – Select input track (it can be ChIP-seq track from GTRD; thus, it can be the result of MACS or SISSRs peak-finder) |
* '''Type of data transformation''' – Type of data transformation | * '''Type of data transformation''' – Type of data transformation | ||
* '''Number of clusters''' – Number of clusters | * '''Number of clusters''' – Number of clusters | ||
* '''Do add numbers of overlaps''' – Do add numbers of overlaps to the set of peak characteristics? | * '''Do add numbers of overlaps''' – Do add numbers of overlaps to the set of peak characteristics? | ||
| − | * '''Path to output folder''' – Output folder will be created under this location | + | * '''Path to output folder''' – Output folder will be created under this location when it doesn<nowiki>'</nowiki>t exist |
[[Category:Analyses]] | [[Category:Analyses]] | ||
Latest revision as of 19:00, 13 February 2017
- Analysis title
ChIP-Seq peaks clusterization
- Provider
- Institute of Systems Biology
- Class
ChIPSeqPeaksClusterization- Plugin
- biouml.plugins.bindingregions (Binding-regions related analyses)
[edit] Description
clusterization of ChIP-Seq peaks ont the basis of peaks characteristics
[edit] Parameters:
- Input track – Select input track (it can be ChIP-seq track from GTRD; thus, it can be the result of MACS or SISSRs peak-finder)
- Type of data transformation – Type of data transformation
- Number of clusters – Number of clusters
- Do add numbers of overlaps – Do add numbers of overlaps to the set of peak characteristics?
- Path to output folder – Output folder will be created under this location when it doesn't exist
