Difference between revisions of "Convert table to track (analysis)"
From BioUML platform
m (Protected "Convert table to track (analysis)": Autogenerated page ([edit=sysop] (indefinite))) |
(Automatic synchronization with BioUML) |
||
| (11 intermediate revisions by one user not shown) | |||
| Line 1: | Line 1: | ||
| − | This analysis | + | ;Analysis title |
| + | :[[File:Operations-with-genomic-tracks-Convert-table-to-track-icon.png]] Convert table to track | ||
| + | ;Provider | ||
| + | :[[Institute of Systems Biology]] | ||
| + | ;Class | ||
| + | :{{Class|ru.biosoft.bsa.analysis.TableToTrack}} | ||
| + | ;Plugin | ||
| + | :[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]] | ||
| + | |||
| + | ==== Description ==== | ||
| + | This analysis converts a table to a track. | ||
==== Parameters: ==== | ==== Parameters: ==== | ||
| Line 7: | Line 17: | ||
* '''From column''' – Column where site start coordinate is located | * '''From column''' – Column where site start coordinate is located | ||
* '''To column''' – Column where site end coordinate is located | * '''To column''' – Column where site end coordinate is located | ||
| + | * '''Strand column''' – Column where site strand is located (+ or -) | ||
* '''Sequence collection''' – Sequences to bind the track to | * '''Sequence collection''' – Sequences to bind the track to | ||
* '''Genome ID string''' – Something like <nowiki>'</nowiki>hg18<nowiki>'</nowiki> or <nowiki>'</nowiki>mm6<nowiki>'</nowiki> | * '''Genome ID string''' – Something like <nowiki>'</nowiki>hg18<nowiki>'</nowiki> or <nowiki>'</nowiki>mm6<nowiki>'</nowiki> | ||
| Line 12: | Line 23: | ||
[[Category:Analyses]] | [[Category:Analyses]] | ||
| − | [[Category: | + | [[Category:Operations with genomic tracks (analyses group)]] |
| + | [[Category:ISB analyses]] | ||
[[Category:Autogenerated pages]] | [[Category:Autogenerated pages]] | ||
Latest revision as of 18:15, 9 December 2020
- Analysis title
Convert table to track
- Provider
- Institute of Systems Biology
- Class
TableToTrack- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
[edit] Description
This analysis converts a table to a track.
[edit] Parameters:
- Input table – Table to convert to the track
- Chromosome (sequence) column – Column where chromosome number is located (either like 'chr1', 'chr:1', 'chr.1' or simply '1')
- From column – Column where site start coordinate is located
- To column – Column where site end coordinate is located
- Strand column – Column where site strand is located (+ or -)
- Sequence collection – Sequences to bind the track to
- Genome ID string – Something like 'hg18' or 'mm6'
- Output track – Path where to store the result
