Difference between revisions of "IPS motif discovery (analysis)"

Latest revision as of 18:15, 9 December 2020

Discover motifs in the sequence set.

Input Sequences – Input Sequences
Initial matrices – Frequecy matrices that will be used as initial approximation
Search for sub motifs – Whether to search for sub motifs
Max iterations – Maximum number of iterations
Min number of sequences – Minimal number of sequences to make a matrix
Window size – Size of window around binding site for calculation of local background
Critical IPS threshold – Critical IPS threshold
Output matrix collection – Collection where constructed matrices will be saved

@@ Line 1: / Line 1: @@
 ;Analysis title
-:[[File:BSA-IPS-motif-discovery-icon.png]] IPS motif discovery
+:[[File:Motif-discovery-IPS-motif-discovery-icon.png]] IPS motif discovery
 ;Provider
 :[[Institute of Systems Biology]]
+;Class
+:{{Class|ru.biosoft.bsa.analysis.IPSMotifDiscoveryAnalysis}}
 ;Plugin
-:ru.biosoft.bsa (Bio-sequences analyses plugin)
+:[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]]
 ==== Description ====
-Discover motifs in the sequence set
+Discover motifs in the sequence set.
 ==== Parameters: ====
@@ Line 21: / Line 23: @@
 [[Category:Analyses]]
-[[Category:BSA (analyses group)]]
+[[Category:Motif discovery (analyses group)]]
 [[Category:ISB analyses]]
 [[Category:Autogenerated pages]]