Difference between revisions of "Convert table to track (analysis)"

Latest revision as of 18:15, 9 December 2020

This analysis converts a table to a track.

Input table – Table to convert to the track
Chromosome (sequence) column – Column where chromosome number is located (either like 'chr1', 'chr:1', 'chr.1' or simply '1')
From column – Column where site start coordinate is located
To column – Column where site end coordinate is located
Strand column – Column where site strand is located (+ or -)
Sequence collection – Sequences to bind the track to
Genome ID string – Something like 'hg18' or 'mm6'
Output track – Path where to store the result

@@ Line 1: / Line 1: @@
-This analysis allows you to convert table to track
+;Analysis title
+:[[File:Operations-with-genomic-tracks-Convert-table-to-track-icon.png]] Convert table to track
+;Provider
+:[[Institute of Systems Biology]]
+;Class
+:{{Class|ru.biosoft.bsa.analysis.TableToTrack}}
+;Plugin
+:[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]]
+==== Description ====
+This analysis converts a table to a track.
 ==== Parameters: ====
@@ Line 7: / Line 17: @@
 * '''From column''' – Column where site start coordinate is located
 * '''To column''' – Column where site end coordinate is located
+* '''Strand column''' – Column where site strand is located (+ or -)
 * '''Sequence collection''' – Sequences to bind the track to
 * '''Genome ID string''' – Something like <nowiki>'</nowiki>hg18<nowiki>'</nowiki> or <nowiki>'</nowiki>mm6<nowiki>'</nowiki>
@@ Line 12: / Line 23: @@
 [[Category:Analyses]]
-[[Category:BSA (analyses group)]]
+[[Category:Operations with genomic tracks (analyses group)]]
+[[Category:ISB analyses]]
 [[Category:Autogenerated pages]]