Difference between revisions of "Search binding sites (analysis)"
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==== Description ==== | ==== Description ==== | ||
| − | Search binding sites | + | Search for TF binding sites in GTRD near the speciefied gene. |
==== Parameters: ==== | ==== Parameters: ==== | ||
Latest revision as of 18:14, 9 December 2020
- Analysis title
Search binding sites
- Provider
- Institute of Systems Biology
- Class
SearchBindingSites- Plugin
- biouml.plugins.gtrd (GTRD)
[edit] Description
Search for TF binding sites in GTRD near the speciefied gene.
[edit] Parameters:
- preparedTables (expert) – preparedTables
- peaksFolder (expert) – peaksFolder
- Organism – Organism
- Gene symbol or ID – Restrict search to sites near this gene, enter 'Any' to search in all genes
- Transcription factor – Transcription factor
- Data set – Data set
- Cell line – Cell line
- Treatment – Treatment/condition
- Max gene distance – Maximal distance from site to gene
- Output type – Type of result
- Binding sites (expert) – Found transcription factor binding sites
