Difference between revisions of "Rbiouml"
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| − | '''rbiouml''' is an {{R}} package which allows accessing [[BioUML server]] from R script. It's available on CRAN repository | + | '''rbiouml''' is an {{R}} package which allows accessing [[BioUML server]] from R script. It's available on CRAN repository. |
| − | Main capabilities | + | == Main capabilities == |
| − | * Retrieving {{Type link|table}}s from BioUML (including any items which can be represented as tables: {{Type link|profile}}s, some kinds of {{Type link|track}}s, etc.) | + | * Retrieving {{Type link|table}}s from BioUML (including any items which can be represented as tables: {{Type link|profile}}s, some kinds of {{Type link|track}}s, etc.); |
| − | * Storing {{Type link|table}}s in BioUML | + | * Storing {{Type link|table}}s in BioUML; |
| − | * Listing items in BioUML repository | + | * Listing items in BioUML repository; |
| − | * Launching BioUML analyses | + | * Launching BioUML analyses; |
* Launching BioUML workflows. | * Launching BioUML workflows. | ||
| + | |||
| + | == Installation == | ||
| + | '''rbiouml''' depends on RCurl package that requires libcurl library and header files. | ||
| + | On ubuntu install libcurl4-gnutls-dev: | ||
| + | sudo apt-get install libcurl4-gnutls-dev | ||
| + | Use the following R command to install rbiouml: | ||
| + | install.packages("rbiouml") | ||
| + | To update from older version use: | ||
| + | update.packages("rbiouml") | ||
| + | |||
| + | == External links == | ||
| + | * [http://cran.r-project.org/web/packages/rbiouml/ CRAN rbiouml page] | ||
| + | * [http://cran.r-project.org/web/packages/rbiouml/vignettes/rbiouml.pdf Getting started with rbiouml] | ||
[[Category:R]] | [[Category:R]] | ||
Latest revision as of 12:30, 19 September 2013
rbiouml is an R package which allows accessing BioUML server from R script. It's available on CRAN repository.
[edit] Main capabilities
- Retrieving
tables from BioUML (including any items which can be represented as tables: 
profiles, some kinds of 
tracks, etc.);
- Storing tables in BioUML;
- Listing items in BioUML repository;
- Launching BioUML analyses;
- Launching BioUML workflows.
[edit] Installation
rbiouml depends on RCurl package that requires libcurl library and header files. On ubuntu install libcurl4-gnutls-dev:
sudo apt-get install libcurl4-gnutls-dev
Use the following R command to install rbiouml:
install.packages("rbiouml")
To update from older version use:
update.packages("rbiouml")
