Difference between revisions of "Biouml.plugins.riboseq (plugin)"
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:[[Institute of Systems Biology]] | :[[Institute of Systems Biology]] | ||
;Version | ;Version | ||
| − | :0.9. | + | :0.9.10 |
=== Analysis methods === | === Analysis methods === | ||
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*[[File:Default-analysis-icon.png]] [[ArticleComparator (analysis)|ArticleComparator]] | *[[File:Default-analysis-icon.png]] [[ArticleComparator (analysis)|ArticleComparator]] | ||
*[[File:Default-analysis-icon.png]] [[ArticleTrackCreator (analysis)|ArticleTrackCreator]] | *[[File:Default-analysis-icon.png]] [[ArticleTrackCreator (analysis)|ArticleTrackCreator]] | ||
| + | *[[File:Default-analysis-icon.png]] [[BAM filter multi-hits (analysis)|BAM filter multi-hits]] | ||
| + | *[[File:Default-analysis-icon.png]] [[BAM filter strand specific (analysis)|BAM filter strand specific]] | ||
*[[File:Default-analysis-icon.png]] [[BuildASiteOffsetTable (analysis)|BuildASiteOffsetTable]] | *[[File:Default-analysis-icon.png]] [[BuildASiteOffsetTable (analysis)|BuildASiteOffsetTable]] | ||
*[[File:Default-analysis-icon.png]] [[BuildProfileModel (analysis)|BuildProfileModel]] | *[[File:Default-analysis-icon.png]] [[BuildProfileModel (analysis)|BuildProfileModel]] | ||
| + | *[[File:Default-analysis-icon.png]] [[ComputeProfileSums (analysis)|ComputeProfileSums]] | ||
*[[File:Default-analysis-icon.png]] [[ComputeTranscriptProfile (analysis)|ComputeTranscriptProfile]] | *[[File:Default-analysis-icon.png]] [[ComputeTranscriptProfile (analysis)|ComputeTranscriptProfile]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Convert genomic BAM to transcriptomic (analysis)|Convert genomic BAM to transcriptomic]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Count reads in transcripts (analysis)|Count reads in transcripts]] | ||
*[[File:Default-analysis-icon.png]] [[CoverageCheker (analysis)|CoverageCheker]] | *[[File:Default-analysis-icon.png]] [[CoverageCheker (analysis)|CoverageCheker]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Estimate read density (analysis)|Estimate read density]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Find unmappable regions (analysis)|Find unmappable regions]] | ||
*[[File:Default-analysis-icon.png]] [[FinderArticlePoints (analysis)|FinderArticlePoints]] | *[[File:Default-analysis-icon.png]] [[FinderArticlePoints (analysis)|FinderArticlePoints]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Isoform TE (analysis)|Isoform TE]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Large sequence minimal unique length (analysis)|Large sequence minimal unique length]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Make GTF for riboseq alignment (analysis)|Make GTF for riboseq alignment]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Mappability histogram (analysis)|Mappability histogram]] | ||
*[[File:Default-analysis-icon.png]] [[PredictStartSites (analysis)|PredictStartSites]] | *[[File:Default-analysis-icon.png]] [[PredictStartSites (analysis)|PredictStartSites]] | ||
*[[File:Default-analysis-icon.png]] [[RiboSeqExp (analysis)|RiboSeqExp]] | *[[File:Default-analysis-icon.png]] [[RiboSeqExp (analysis)|RiboSeqExp]] | ||
*[[File:Default-analysis-icon.png]] [[SVM (analysis)|SVM]] | *[[File:Default-analysis-icon.png]] [[SVM (analysis)|SVM]] | ||
*[[File:Default-analysis-icon.png]] [[SelectionTrustClusters (analysis)|SelectionTrustClusters]] | *[[File:Default-analysis-icon.png]] [[SelectionTrustClusters (analysis)|SelectionTrustClusters]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Sequence mappability (analysis)|Sequence mappability]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Sequence minimal unique length (analysis)|Sequence minimal unique length]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Transcript structure analysis]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Transcriptome mappability (analysis)|Transcriptome mappability]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Transcriptome minimal unique length (analysis)|Transcriptome minimal unique length]] | ||
=== Perspectives === | === Perspectives === | ||
Latest revision as of 16:35, 12 March 2019
- ID
- biouml.plugins.riboseq
- Name
- RiboSeq Experiment
- Provider
- Institute of Systems Biology
- Version
- 0.9.10
[edit] Analysis methods
Analysis methods defined in this plugin:
ArticleComparator
- ArticleTrackCreator
- BAM filter multi-hits
- BAM filter strand specific
- BuildASiteOffsetTable
- BuildProfileModel
- ComputeProfileSums
- ComputeTranscriptProfile
- Convert genomic BAM to transcriptomic
- Count reads in transcripts
- CoverageCheker
- Estimate read density
- Find unmappable regions
- FinderArticlePoints
- Isoform TE
- Large sequence minimal unique length
- Make GTF for riboseq alignment
- Mappability histogram
- PredictStartSites
- RiboSeqExp
- SVM
- SelectionTrustClusters
- Sequence mappability
- Sequence minimal unique length
- Transcript structure analysis
- Transcriptome mappability
- Transcriptome minimal unique length
[edit] Perspectives
Perspectives defined in this plugin:
