Difference between revisions of "Biouml.plugins.gtrd (plugin)"

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:[[Institute of Systems Biology]]
 
:[[Institute of Systems Biology]]
 
;Version
 
;Version
:0.9.4
+
:0.9.10
  
 
=== Analysis methods ===
 
=== Analysis methods ===
 
Analysis methods defined in this plugin:
 
Analysis methods defined in this plugin:
*[[Compare Experiments (analysis)|Compare Experiments]]
+
*[[File:Default-analysis-icon.png]] [[ChIP-seq Quality control analysis]]
*[[Diff Encode (analysis)|Diff Encode]]
+
*[[File:Default-analysis-icon.png]] [[Compare Experiments (analysis)|Compare Experiments]]
*[[Gene features (analysis)|Gene features]]
+
*[[File:BSA-Compute-profile-thresholds-icon.png]] [[Compute profile thresholds (analysis)|Compute profile thresholds]]
*[[Import Encode (analysis)|Import Encode]]
+
*[[File:Default-analysis-icon.png]] [[Create flat files (analysis)|Create flat files]]
*[[Match Encode antibodies (analysis)|Match Encode antibodies]]
+
*[[File:Default-analysis-icon.png]] [[Encode quality metrics estimation (analysis)|Encode quality metrics estimation]]
*[[Symmetry points (analysis)|Symmetry points]]
+
*[[File:Default-analysis-icon.png]] [[Gene features (analysis)|Gene features]]
*[[Upgrade (analysis)|Upgrade]]
+
*[[File:Default-analysis-icon.png]] [[Import HOCOMOCO (analysis)|Import HOCOMOCO]]
*[[Validate Experiments (analysis)|Validate Experiments]]
+
*[[File:Default-analysis-icon.png]] [[Join GTRD Tracks (analysis)|Join GTRD Tracks]]
 +
*[[File:Default-analysis-icon.png]] [[Join GTRD clusters (analysis)|Join GTRD clusters]]
 +
*[[File:Default-analysis-icon.png]] [[Make meta tracks (analysis)|Make meta tracks]]
 +
*[[File:Default-analysis-icon.png]] [[Merge peak callers (analysis)|Merge peak callers]]
 +
*[[File:Default-analysis-icon.png]] [[Merge peaks (analysis)|Merge peaks]]
 +
*[[File:Default-analysis-icon.png]] [[Open per TF view (analysis)|Open per TF view]]
 +
*[[File:Default-analysis-icon.png]] [[Open tracks for all TF (analysis)|Open tracks for all TF]]
 +
*[[File:Default-analysis-icon.png]] [[Prepare Search by regulation (analysis)|Prepare Search by regulation]]
 +
*[[File:Default-analysis-icon.png]] [[Prepare cluster to exp table (analysis)|Prepare cluster to exp table]]
 +
*[[File:Default-analysis-icon.png]] [[Prepare finished tables (analysis)|Prepare finished tables]]
 +
*[[File:Default-analysis-icon.png]] [[Quality control analysis]]
 +
*[[File:Default-analysis-icon.png]] [[Quality control metrics (analysis)|Quality control metrics]]
 +
*[[File:Default-analysis-icon.png]] [[Report generator for quality control analysis]]
 +
*[[File:Default-analysis-icon.png]] [[Search binding sites (analysis)|Search binding sites]]
 +
*[[File:Default-analysis-icon.png]] [[Update pubmed (analysis)|Update pubmed]]
 +
*[[File:Default-analysis-icon.png]] [[Validate Experiments (analysis)|Validate Experiments]]
  
 
=== Perspectives ===
 
=== Perspectives ===
 
[[Perspective]]s defined in this plugin:
 
[[Perspective]]s defined in this plugin:
 +
*[[ChIP-seq Quality Control Analysis (perspective)|ChIP-seq Quality Control Analysis]]
 
*[[GTRD (perspective)|GTRD]]
 
*[[GTRD (perspective)|GTRD]]
 
=== Host objects ===
 
JavaScript [[Host object (extension point)|host objects]] defined in this plugin:
 
*[[Gtrd (host object)|gtrd]]
 
*[[Gtrdbuild (host object)|gtrdbuild]]
 
  
 
=== Reference types ===
 
=== Reference types ===
 
[[Reference type]]s defined in this plugin:
 
[[Reference type]]s defined in this plugin:
 +
*[[File:ReferenceType-ClassGTRDType-icon.png]] [[Categories - GTRD|Categories: GTRD]]
 +
*[[File:ReferenceType-ExperimentGTRDType-icon.png]] [[ChIP experiment - GTRD|ChIP experiment: GTRD]]
 +
*[[File:ReferenceType-PeaksGTRDType-icon.png]] [[ChIP-seq peaks - GTRD|ChIP-seq peaks: GTRD]]
 +
*[[File:ReferenceType-IsoformGTRDType-icon.png]] [[Isoforms - GTRD|Isoforms: GTRD]]
 +
*[[File:ReferenceType-MatrixGTRDType-icon.png]] [[Matrices - GTRD|Matrices: GTRD]]
 
*[[File:ReferenceType-ProteinGTRDType-icon.png]] [[Proteins - GTRD|Proteins: GTRD]]
 
*[[File:ReferenceType-ProteinGTRDType-icon.png]] [[Proteins - GTRD|Proteins: GTRD]]
*[[File:ReferenceType-IsoformGTRDType-icon.png]] [[Isoforms - GTRD|Isoforms: GTRD]]
 
 
*[[File:ReferenceType-SiteModelGTRDType-icon.png]] [[Site models - GTRD|Site models: GTRD]]
 
*[[File:ReferenceType-SiteModelGTRDType-icon.png]] [[Site models - GTRD|Site models: GTRD]]
*[[File:ReferenceType-MatrixGTRDType-icon.png]] [[Matrices - GTRD|Matrices: GTRD]]
 
*[[File:ReferenceType-ClassGTRDType-icon.png]] [[Categories - GTRD|Categories: GTRD]]
 
*[[File:ReferenceType-PeaksGTRDType-icon.png]] [[ChIP-seq peaks - GTRD|ChIP-seq peaks: GTRD]]
 
  
 
[[Category:Plugins]]
 
[[Category:Plugins]]
 
[[Category:ISB plugins]]
 
[[Category:ISB plugins]]
 
[[Category:Autogenerated pages]]
 
[[Category:Autogenerated pages]]

Latest revision as of 16:35, 12 March 2019

ID
biouml.plugins.gtrd
Name
GTRD
Provider
Institute of Systems Biology
Version
0.9.10

[edit] Analysis methods

Analysis methods defined in this plugin:

[edit] Perspectives

Perspectives defined in this plugin:

[edit] Reference types

Reference types defined in this plugin:

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