Quality control analysis

Calculation of quality control metrics for assessing tracks from GTRD and AUCs-applications.

Data Type – Select data Type
Type of combined peaks – Type of combined peaks
Minimal length of binding region – Minimal length of binding region
Maximal length of binding region – Maximal length of binding region
FPCM threshold – FPCM threshold
Do calculate AUCs – Do calculate AUCs
Path to folder with site models – Path to folder with site models
Site model name – Please, select site model name
Sequences collection – Select a source of nucleotide sequences
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
Parameters for case of several folders – Please, determine parameters for case of several folders
- Paths to data sets – Paths to data sets
Parameters for case of single folder – Please, determine parameters for case of single folder
- Path to folder with files or tracks – Path to folder with bed-files or tracks
- File names – Select file names
Path to output folder – Path to output folder