Difference between revisions of "Biouml.plugins.gtrd (plugin)"
From BioUML platform
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:[[Institute of Systems Biology]] | :[[Institute of Systems Biology]] | ||
;Version | ;Version | ||
| − | :0.9. | + | :0.9.10 |
=== Analysis methods === | === Analysis methods === | ||
Analysis methods defined in this plugin: | Analysis methods defined in this plugin: | ||
| − | *[[Compare Experiments (analysis)|Compare Experiments]] | + | *[[File:Default-analysis-icon.png]] [[ChIP-seq Quality control analysis]] |
| − | *[[ | + | *[[File:Default-analysis-icon.png]] [[Compare Experiments (analysis)|Compare Experiments]] |
| − | *[[Gene features (analysis)|Gene features]] | + | *[[File:BSA-Compute-profile-thresholds-icon.png]] [[Compute profile thresholds (analysis)|Compute profile thresholds]] |
| − | *[[Import | + | *[[File:Default-analysis-icon.png]] [[Create flat files (analysis)|Create flat files]] |
| − | *[[ | + | *[[File:Default-analysis-icon.png]] [[Encode quality metrics estimation (analysis)|Encode quality metrics estimation]] |
| − | *[[ | + | *[[File:Default-analysis-icon.png]] [[Gene features (analysis)|Gene features]] |
| − | *[[ | + | *[[File:Default-analysis-icon.png]] [[Import HOCOMOCO (analysis)|Import HOCOMOCO]] |
| − | *[[Validate Experiments (analysis)|Validate Experiments]] | + | *[[File:Default-analysis-icon.png]] [[Join GTRD Tracks (analysis)|Join GTRD Tracks]] |
| + | *[[File:Default-analysis-icon.png]] [[Join GTRD clusters (analysis)|Join GTRD clusters]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Make meta tracks (analysis)|Make meta tracks]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Merge peak callers (analysis)|Merge peak callers]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Merge peaks (analysis)|Merge peaks]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Open per TF view (analysis)|Open per TF view]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Open tracks for all TF (analysis)|Open tracks for all TF]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Prepare Search by regulation (analysis)|Prepare Search by regulation]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Prepare cluster to exp table (analysis)|Prepare cluster to exp table]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Prepare finished tables (analysis)|Prepare finished tables]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Quality control analysis]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Quality control metrics (analysis)|Quality control metrics]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Report generator for quality control analysis]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Search binding sites (analysis)|Search binding sites]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Update pubmed (analysis)|Update pubmed]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Validate Experiments (analysis)|Validate Experiments]] | ||
=== Perspectives === | === Perspectives === | ||
[[Perspective]]s defined in this plugin: | [[Perspective]]s defined in this plugin: | ||
| + | *[[ChIP-seq Quality Control Analysis (perspective)|ChIP-seq Quality Control Analysis]] | ||
*[[GTRD (perspective)|GTRD]] | *[[GTRD (perspective)|GTRD]] | ||
=== Reference types === | === Reference types === | ||
[[Reference type]]s defined in this plugin: | [[Reference type]]s defined in this plugin: | ||
| − | *[[File:ReferenceType- | + | *[[File:ReferenceType-ClassGTRDType-icon.png]] [[Categories - GTRD|Categories: GTRD]] |
| − | *[[ | + | *[[File:ReferenceType-ExperimentGTRDType-icon.png]] [[ChIP experiment - GTRD|ChIP experiment: GTRD]] |
| − | *[[ | + | *[[File:ReferenceType-PeaksGTRDType-icon.png]] [[ChIP-seq peaks - GTRD|ChIP-seq peaks: GTRD]] |
| + | *[[File:ReferenceType-IsoformGTRDType-icon.png]] [[Isoforms - GTRD|Isoforms: GTRD]] | ||
*[[File:ReferenceType-MatrixGTRDType-icon.png]] [[Matrices - GTRD|Matrices: GTRD]] | *[[File:ReferenceType-MatrixGTRDType-icon.png]] [[Matrices - GTRD|Matrices: GTRD]] | ||
| − | *[[ | + | *[[File:ReferenceType-ProteinGTRDType-icon.png]] [[Proteins - GTRD|Proteins: GTRD]] |
| − | *[[ | + | *[[File:ReferenceType-SiteModelGTRDType-icon.png]] [[Site models - GTRD|Site models: GTRD]] |
[[Category:Plugins]] | [[Category:Plugins]] | ||
[[Category:ISB plugins]] | [[Category:ISB plugins]] | ||
[[Category:Autogenerated pages]] | [[Category:Autogenerated pages]] | ||
Latest revision as of 16:35, 12 March 2019
- ID
- biouml.plugins.gtrd
- Name
- GTRD
- Provider
- Institute of Systems Biology
- Version
- 0.9.10
[edit] Analysis methods
Analysis methods defined in this plugin:
ChIP-seq Quality control analysis
- Compare Experiments
Compute profile thresholds
- Create flat files
- Encode quality metrics estimation
- Gene features
- Import HOCOMOCO
- Join GTRD Tracks
- Join GTRD clusters
- Make meta tracks
- Merge peak callers
- Merge peaks
- Open per TF view
- Open tracks for all TF
- Prepare Search by regulation
- Prepare cluster to exp table
- Prepare finished tables
- Quality control analysis
- Quality control metrics
- Report generator for quality control analysis
- Search binding sites
- Update pubmed
- Validate Experiments
[edit] Perspectives
Perspectives defined in this plugin:
[edit] Reference types
Reference types defined in this plugin:
