Difference between revisions of "Biouml.plugins.riboseq (plugin)"
From BioUML platform
(Automatic synchronization with BioUML) |
(Automatic synchronization with BioUML) |
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:[[Institute of Systems Biology]] | :[[Institute of Systems Biology]] | ||
;Version | ;Version | ||
− | :0.9. | + | :0.9.10 |
=== Analysis methods === | === Analysis methods === | ||
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*[[File:Default-analysis-icon.png]] [[ArticleComparator (analysis)|ArticleComparator]] | *[[File:Default-analysis-icon.png]] [[ArticleComparator (analysis)|ArticleComparator]] | ||
*[[File:Default-analysis-icon.png]] [[ArticleTrackCreator (analysis)|ArticleTrackCreator]] | *[[File:Default-analysis-icon.png]] [[ArticleTrackCreator (analysis)|ArticleTrackCreator]] | ||
+ | *[[File:Default-analysis-icon.png]] [[BAM filter multi-hits (analysis)|BAM filter multi-hits]] | ||
+ | *[[File:Default-analysis-icon.png]] [[BAM filter strand specific (analysis)|BAM filter strand specific]] | ||
*[[File:Default-analysis-icon.png]] [[BuildASiteOffsetTable (analysis)|BuildASiteOffsetTable]] | *[[File:Default-analysis-icon.png]] [[BuildASiteOffsetTable (analysis)|BuildASiteOffsetTable]] | ||
*[[File:Default-analysis-icon.png]] [[BuildProfileModel (analysis)|BuildProfileModel]] | *[[File:Default-analysis-icon.png]] [[BuildProfileModel (analysis)|BuildProfileModel]] | ||
+ | *[[File:Default-analysis-icon.png]] [[ComputeProfileSums (analysis)|ComputeProfileSums]] | ||
*[[File:Default-analysis-icon.png]] [[ComputeTranscriptProfile (analysis)|ComputeTranscriptProfile]] | *[[File:Default-analysis-icon.png]] [[ComputeTranscriptProfile (analysis)|ComputeTranscriptProfile]] | ||
+ | *[[File:Default-analysis-icon.png]] [[Convert genomic BAM to transcriptomic (analysis)|Convert genomic BAM to transcriptomic]] | ||
+ | *[[File:Default-analysis-icon.png]] [[Count reads in transcripts (analysis)|Count reads in transcripts]] | ||
*[[File:Default-analysis-icon.png]] [[CoverageCheker (analysis)|CoverageCheker]] | *[[File:Default-analysis-icon.png]] [[CoverageCheker (analysis)|CoverageCheker]] | ||
+ | *[[File:Default-analysis-icon.png]] [[Estimate read density (analysis)|Estimate read density]] | ||
+ | *[[File:Default-analysis-icon.png]] [[Find unmappable regions (analysis)|Find unmappable regions]] | ||
*[[File:Default-analysis-icon.png]] [[FinderArticlePoints (analysis)|FinderArticlePoints]] | *[[File:Default-analysis-icon.png]] [[FinderArticlePoints (analysis)|FinderArticlePoints]] | ||
+ | *[[File:Default-analysis-icon.png]] [[Isoform TE (analysis)|Isoform TE]] | ||
+ | *[[File:Default-analysis-icon.png]] [[Large sequence minimal unique length (analysis)|Large sequence minimal unique length]] | ||
+ | *[[File:Default-analysis-icon.png]] [[Make GTF for riboseq alignment (analysis)|Make GTF for riboseq alignment]] | ||
*[[File:Default-analysis-icon.png]] [[PredictStartSites (analysis)|PredictStartSites]] | *[[File:Default-analysis-icon.png]] [[PredictStartSites (analysis)|PredictStartSites]] | ||
*[[File:Default-analysis-icon.png]] [[RiboSeqExp (analysis)|RiboSeqExp]] | *[[File:Default-analysis-icon.png]] [[RiboSeqExp (analysis)|RiboSeqExp]] | ||
*[[File:Default-analysis-icon.png]] [[SVM (analysis)|SVM]] | *[[File:Default-analysis-icon.png]] [[SVM (analysis)|SVM]] | ||
*[[File:Default-analysis-icon.png]] [[SelectionTrustClusters (analysis)|SelectionTrustClusters]] | *[[File:Default-analysis-icon.png]] [[SelectionTrustClusters (analysis)|SelectionTrustClusters]] | ||
+ | *[[File:Default-analysis-icon.png]] [[Sequence mappability (analysis)|Sequence mappability]] | ||
+ | *[[File:Default-analysis-icon.png]] [[Sequence minimal unique length (analysis)|Sequence minimal unique length]] | ||
+ | *[[File:Default-analysis-icon.png]] [[Transcript structure analysis]] | ||
+ | *[[File:Default-analysis-icon.png]] [[Transcriptome mappability (analysis)|Transcriptome mappability]] | ||
+ | *[[File:Default-analysis-icon.png]] [[Transcriptome minimal unique length (analysis)|Transcriptome minimal unique length]] | ||
=== Perspectives === | === Perspectives === |
Revision as of 19:03, 13 February 2017
- ID
- biouml.plugins.riboseq
- Name
- RiboSeq Experiment
- Provider
- Institute of Systems Biology
- Version
- 0.9.10
Analysis methods
Analysis methods defined in this plugin:
ArticleComparator
ArticleTrackCreator
BAM filter multi-hits
BAM filter strand specific
BuildASiteOffsetTable
BuildProfileModel
ComputeProfileSums
ComputeTranscriptProfile
Convert genomic BAM to transcriptomic
Count reads in transcripts
CoverageCheker
Estimate read density
Find unmappable regions
FinderArticlePoints
Isoform TE
Large sequence minimal unique length
Make GTF for riboseq alignment
PredictStartSites
RiboSeqExp
SVM
SelectionTrustClusters
Sequence mappability
Sequence minimal unique length
Transcript structure analysis
Transcriptome mappability
Transcriptome minimal unique length
Perspectives
Perspectives defined in this plugin: