Difference between revisions of "Biouml.plugins.riboseq (plugin)"
From BioUML platform
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*[[File:Default-analysis-icon.png]] [[Large sequence minimal unique length (analysis)|Large sequence minimal unique length]] | *[[File:Default-analysis-icon.png]] [[Large sequence minimal unique length (analysis)|Large sequence minimal unique length]] | ||
*[[File:Default-analysis-icon.png]] [[Make GTF for riboseq alignment (analysis)|Make GTF for riboseq alignment]] | *[[File:Default-analysis-icon.png]] [[Make GTF for riboseq alignment (analysis)|Make GTF for riboseq alignment]] | ||
+ | *[[File:Default-analysis-icon.png]] [[Mappability histogram (analysis)|Mappability histogram]] | ||
*[[File:Default-analysis-icon.png]] [[PredictStartSites (analysis)|PredictStartSites]] | *[[File:Default-analysis-icon.png]] [[PredictStartSites (analysis)|PredictStartSites]] | ||
*[[File:Default-analysis-icon.png]] [[RiboSeqExp (analysis)|RiboSeqExp]] | *[[File:Default-analysis-icon.png]] [[RiboSeqExp (analysis)|RiboSeqExp]] |
Latest revision as of 16:35, 12 March 2019
- ID
- biouml.plugins.riboseq
- Name
- RiboSeq Experiment
- Provider
- Institute of Systems Biology
- Version
- 0.9.10
[edit] Analysis methods
Analysis methods defined in this plugin:
ArticleComparator
ArticleTrackCreator
BAM filter multi-hits
BAM filter strand specific
BuildASiteOffsetTable
BuildProfileModel
ComputeProfileSums
ComputeTranscriptProfile
Convert genomic BAM to transcriptomic
Count reads in transcripts
CoverageCheker
Estimate read density
Find unmappable regions
FinderArticlePoints
Isoform TE
Large sequence minimal unique length
Make GTF for riboseq alignment
Mappability histogram
PredictStartSites
RiboSeqExp
SVM
SelectionTrustClusters
Sequence mappability
Sequence minimal unique length
Transcript structure analysis
Transcriptome mappability
Transcriptome minimal unique length
[edit] Perspectives
Perspectives defined in this plugin: