Difference between revisions of "Track coverage (analysis)"

From BioUML platform
Jump to: navigation, search
(Link to plugin page)
(Automatic synchronization with BioUML)
Line 1: Line 1:
 
;Analysis title
 
;Analysis title
:[[File:BSA-Track-coverage-icon.png]] Track coverage
+
:[[File:Track-coverage-analysis-icon.png]] Track coverage
 
;Provider
 
;Provider
 
:[[Institute of Systems Biology]]
 
:[[Institute of Systems Biology]]

Revision as of 12:32, 16 May 2013

Analysis title
File:Track-coverage-analysis-icon.png Track coverage
Provider
Institute of Systems Biology
Plugin
ru.biosoft.bsa (Bio-sequences analyses plugin)

Description

Calculates the coverage of given track

Parameters:

  • Input track – Track to calculate coverage for
  • Sequences – Collection of sequences
    • Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
    • Sequence collection – Sequence collection
    • Genome ID string – Something like 'hg18' or 'mm6'
  • Window size – Size of the window to average the coverage
  • Step – Number of bp to step (at least 1000)
  • Output empty intervals – When checked, intervals without single site will appear in the output table as well
  • Output table – Path to the output table
Personal tools
Namespaces

Variants
Actions
BioUML platform
Community
Modelling
Analysis & Workflows
Collaborative research
Development
Virtual biology
Wiki
Toolbox