Difference between revisions of "Systems biology - manual model construction"

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(Building from scratch)
(Building from scratch)
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<h3><b>Creation of a new diagram</b></h3>
 
<h3><b>Creation of a new diagram</b></h3>
 
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<font size="3">
The model development process is initiated by creation of the model network or diagram. A new diagram can be made in the <b>Work Space</b> by two methods:  
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The model development process is initiated by creation of the model network or {{Type link|diagram}}. A new diagram can be made in the <b>Work Space</b> by two methods:  
 
<ol>
 
<ol>
 
<li>via <b>Control Panel → New Diagram</b> (<b>Note</b>: please select the correct folder for a new diagram in your project area):
 
<li>via <b>Control Panel → New Diagram</b> (<b>Note</b>: please select the correct folder for a new diagram in your project area):
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</ol>
 
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The platform will ask you to select the diagram type and specify the diagram name you want to create in the work space. In the following, the creation of a new <b><i>“SBML model in SBGN notation”</i></b> will be described.
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The platform will ask you to select the {{Type link|diagram}} type and specify the {{Type link|diagram}} name you want to create in the work space. In the following, the creation of a new <b><i>“SBML model in SBGN notation”</i></b> will be described.
  
 
<br><br>[[File:Model_fromscratch_Fig3.png]]<br><br>
 
<br><br>[[File:Model_fromscratch_Fig3.png]]<br><br>

Revision as of 00:27, 16 March 2022

Contents

Building from scratch

Creation of a new diagram

The model development process is initiated by creation of the model network or Type-diagram-icon.png diagram. A new diagram can be made in the Work Space by two methods:

  1. via Control Panel → New Diagram (Note: please select the correct folder for a new diagram in your project area):

    Model fromscratch Fig1.png

  2. via the Tree Area by a single click with the right mouse button on the corresponding folder of the project:

    Model fromscratch Fig2.png

The platform will ask you to select the Type-diagram-icon.png diagram type and specify the Type-diagram-icon.png diagram name you want to create in the work space. In the following, the creation of a new “SBML model in SBGN notation” will be described.



Model fromscratch Fig3.png

Upon selecting the type of a diagram and clicking Ok button a new node New Diagram will appear in the Tree Area and the corresponding tab is opened in the Work Space to start the diagram creation.



Model fromscratch Fig3 1.png

A pathway diagram opened in the work space has a tool bar as shown below:

Model fromscratch Fig4.png

Adding a new element to the diagram

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