Steady State (analysis)

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Revision as of 18:07, 14 June 2013 by BioUML wiki Bot (Talk | contribs)

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Analysis title
Default-analysis-icon.png Steady State
Provider
Institute of Systems Biology
Class
SteadyStateAnalysis
Plugin
biouml.plugins.modelreduction (Model reduction plug-in)

Description

Model steady state finding.

Parameters:

  • Diagram – Diagram for analysis.
  • Steady state name – Steady state name if empty - steady state parameters will be set to default state.
  • Result diagram – Diagram with steady state values.
  • Variable names (expert) – Variables which values will be used for steady state detection. If no variables selected then all variables will be used
  • Relative tolerance – Relative tolerance for the steady state checking.
  • Absolute tolerance – Absolute tolerance for the steady state checking.
  • Validation series size (expert) – Size of parameters time series for steady state check.
  • Start search time (expert) – Time to start the steady state searching.
  • Simulation options (expert) – Simulation engine, suitable for chosen diagram.
    • Engine type – Engine type.
    • Engine options – Engine options.
      • Initial time – Initial time.
      • Completion time – Completion time.
      • Time increment – Time increment.
      • Simulator name – Simulator name
      • Simulator options – Simulator options
        • Absolute tolerance – Absolute tolerance.
        • Relative tolerance – Relative tolerance.
        • Statistics mode – Statistics mode
        • Integration method – Integration method (ADAMS or BDF)
        • Inner linear solver type – Inner linear solver type
        • Jacobian approximation type – Jacobian approximation type
        • Steps limit – Limitation for solver steps count
        • Minimum time step – minimum time step
        • Maximum time step inversed – 1 / maximum time step
        • Mu – Upper bandwidth of Banded Jacobian
        • Ml – Lower bandwidth of Banded Jacobian
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