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- Type driver (extension point) (10:44, 14 May 2013)
- Preprocessor (extension point) (10:49, 14 May 2013)
- Annotation (extension point) (10:57, 14 May 2013)
- Proteins - Transpath peptides (18:14, 14 May 2013)
- Genes - Transpath (18:14, 14 May 2013)
- Proteins - Transpath modified forms (18:14, 14 May 2013)
- Proteins - Transpath (18:14, 14 May 2013)
- Proteins - EndoNet (18:14, 14 May 2013)
- Proteins - Transpath complexes (18:14, 14 May 2013)
- Genes - Illumina (18:14, 14 May 2013)
- Probes (reference type) (18:14, 14 May 2013)
- Transcripts - Illumina (18:14, 14 May 2013)
- Matrices - TRANSFAC (18:14, 14 May 2013)
- Proteins - BKL (18:14, 14 May 2013)
- Genes (reference type) (18:14, 14 May 2013)
- SNP (reference type) (18:14, 14 May 2013)
- Proteins - Transfac (18:14, 14 May 2013)
- Matrices (reference type) (18:14, 14 May 2013)
- Proteins - GTRD (18:14, 14 May 2013)
- Transcripts (reference type) (18:14, 14 May 2013)
- Proteins (reference type) (18:14, 14 May 2013)
- Genes - BKL (18:14, 14 May 2013)
- Matrices - GTRD (10:14, 15 May 2013)
- Reference type (extension point) (10:36, 15 May 2013)
- Probes - Agilent (14:32, 15 May 2013)
- Probes - Affymetrix (14:32, 15 May 2013)
- Genes - GenBank (14:33, 15 May 2013)
- Proteins - RefSeq (14:33, 15 May 2013)
- Proteins - IPI (14:33, 15 May 2013)
- Genes - Unigene (14:33, 15 May 2013)
- Probes - Illumina (14:33, 15 May 2013)
- Genes - Gene symbol (14:33, 15 May 2013)
- Genes - Entrez (14:33, 15 May 2013)
- Transcripts - RefSeq (14:33, 15 May 2013)
- Html (element type) (11:04, 16 May 2013)
- Find master regulators for multiple gene sets (TRANSPATH(R)) (workflow) (13:28, 16 May 2013)
- Find common effectors in networks (TRANSPATH(R)) (workflow) (13:28, 16 May 2013)
- Find master regulators in networks (TRANSPATH(R)) (workflow) (13:28, 16 May 2013)
- R (host object) (14:57, 16 May 2013)
- Das (host object) (14:57, 16 May 2013)
- Cdk (host object) (14:57, 16 May 2013)
- Chipmunk (host object) (14:57, 16 May 2013)
- Ensembl (host object) (14:57, 16 May 2013)
- Galaxy (host object) (14:57, 16 May 2013)
- Microarray (host object) (14:57, 16 May 2013)
- ModelReduction (host object) (14:57, 16 May 2013)
- Network (host object) (14:57, 16 May 2013)
- Optimization (host object) (14:57, 16 May 2013)
- Sbml (host object) (14:57, 16 May 2013)
- Sbw (host object) (14:57, 16 May 2013)
- SimulationEngine (host object) (14:57, 16 May 2013)
- Table (host object) (14:57, 16 May 2013)
- Host object (extension point) (15:12, 16 May 2013)
- Default (perspective) (15:46, 16 May 2013)
- ChIPMunk (perspective) (15:47, 16 May 2013)
- GTRD (perspective) (15:47, 16 May 2013)
- Softberry (perspective) (15:47, 16 May 2013)
- Softberry, Inc. (16:01, 16 May 2013)
- Autosome.Ru (17:10, 16 May 2013)
- Peaks to matrices (workflow) (17:23, 16 May 2013)
- Reads to matrices (workflow) (17:23, 16 May 2013)
- Analysis (element type) (18:04, 16 May 2013)
- Galaxy method (element type) (16:30, 17 May 2013)
- File (element type) (16:31, 17 May 2013)
- BED format (16:39, 17 May 2013)
- Breakdancer output (file format) (16:39, 17 May 2013)
- CNVnator genotype output (file format) (16:39, 17 May 2013)
- Gene Transfer Format (16:39, 17 May 2013)
- General Feature Format (16:40, 17 May 2013)
- HTML file (16:40, 17 May 2013)
- Image file (16:40, 17 May 2013)
- Interval format (16:40, 17 May 2013)
- Pindel output (file format) (16:40, 17 May 2013)
- Tabular (file format) (16:40, 17 May 2013)
- Text file (16:40, 17 May 2013)
- Text output file generated by R (file format) (16:40, 17 May 2013)
- VAT output (file format) (16:40, 17 May 2013)
- Varscan output (file format) (16:40, 17 May 2013)
- VCF format (16:40, 17 May 2013)
- ZIP-archive (file format) (16:40, 17 May 2013)
- Wiggle format (16:40, 17 May 2013)
- Matrix library (element type) (16:52, 17 May 2013)
- Matrix (element type) (17:04, 17 May 2013)
- Site model (element type) (17:15, 17 May 2013)
- Profile (element type) (17:23, 17 May 2013)
- Biohub (extension point) (11:17, 20 May 2013)
- BioHub (11:18, 20 May 2013)
- Method description HTML file (10:51, 28 May 2013)
- Upstream analysis (TRANSFAC(R) and GeneWays) (workflow) (13:34, 30 May 2013)
- Upstream analysis (TRANSFAC(R) and TRANSPATH(R)) (workflow) (13:34, 30 May 2013)
- Folder (element type) (17:40, 30 May 2013)
- Join table (analysis) (11:14, 31 May 2013)
- Extend network (analysis) (11:15, 31 May 2013)
- Map to Transpath (analysis) (11:15, 31 May 2013)
- Join diagrams (analysis) (11:15, 31 May 2013)
- Evolution strategy (SRES) (analysis) (11:15, 31 May 2013)
- Cellular genetic algorithm (analysis) (11:15, 31 May 2013)
- GLBSOLVE (analysis) (11:15, 31 May 2013)
- Particle swarm optimization (analysis) (11:15, 31 May 2013)
- Quadratic Hill-climbing (analysis) (11:15, 31 May 2013)
