Sites Open Chromatin Statistics (analysis)

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Analysis title
Default-analysis-icon.png Sites Open Chromatin Statistics
Provider
Institute of Systems Biology
Class
SitesOpenChromatin
Plugin
biouml.plugins.gtrd (GTRD)

Description

Getting Statistics of sites in open chromatin

Parameters:

  • Input SQL ChIP Track – Input SQL ChIP Track
  • Input SQL Dnase Track – Input Dnase ChIP Track
  • Path to ChipTracks – Path to ChipTracks
  • Folder names – Folder names
  • prefix – write prefix of output file
  • Number of threads – Number of threads
  • More then 1 track – Choose if you need more then 1 track
  • Record result to GTRD database – Record result to GTRD database
  • write new table – record new table to GTRD database
  • write data to existed table – record data to existed table in GTRD database
  • nameOfExistedTable – nameOfExistedTable
  • path to output file – choose folder for output file
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