Difference between revisions of "Site search result optimization (analysis)"

From BioUML platform
Jump to: navigation, search
(Automatic synchronization with BioUML)
 
(Added 'Autogenerated pages' category)
Line 14: Line 14:
 
[[Category:Analyses]]
 
[[Category:Analyses]]
 
[[Category:BSA (analyses group)]]
 
[[Category:BSA (analyses group)]]
 +
[[Category:Autogenerated pages]]

Revision as of 16:27, 4 April 2013

Tune matrix weights to minimize p-values

Parameters:

  • Input yes track – Site search result for genes expressed in experiment
  • Input no track – Site search result for background genes
  • P-value cutoff – Matrix will be removed from result if p-value cannot be optimized to values lower than specified cutoff
  • Optimization type – Whether to optimize only matrix cutoffs, promoter windows or both
  • Output yes track – Filtered site search result for expressed genes
  • Output no track – Filtered site search result for background genes
  • Overrepresented matrices in summary – Remove underrepresented matrices from the output (not applicable if no-set is not specified)
  • Output name – Output name
Personal tools
Namespaces

Variants
Actions
BioUML platform
Community
Modelling
Analysis & Workflows
Collaborative research
Development
Virtual biology
Wiki
Toolbox