Difference between revisions of "Site search on track (analysis)"

From BioUML platform
Jump to: navigation, search
(Automatic synchronization with BioUML)
(Automatic synchronization with BioUML)
 
(One intermediate revision by one user not shown)
Line 1: Line 1:
 
;Analysis title
 
;Analysis title
:[[File:BSA-Site-search-on-track-icon.png]] Site search on track
+
:[[File:TF-binding-site-search-Site-search-on-track-icon.png]] Site search on track
 
;Provider
 
;Provider
 
:[[Institute of Systems Biology]]
 
:[[Institute of Systems Biology]]
Line 9: Line 9:
  
 
==== Description ====
 
==== Description ====
Predict transcription factor binding sites
+
Predict transcription factor binding sites.
  
 
==== Parameters: ====
 
==== Parameters: ====
  
 +
* '''Track''' – Filtering track
 
* '''Sequences source''' – Select database to get sequences from or <nowiki>'</nowiki>Custom<nowiki>'</nowiki> to specify sequences location manually
 
* '''Sequences source''' – Select database to get sequences from or <nowiki>'</nowiki>Custom<nowiki>'</nowiki> to specify sequences location manually
 
* '''Sequences collection''' – Collection of sequences
 
* '''Sequences collection''' – Collection of sequences
* '''Track''' – Filtering track
 
 
* '''Profile''' – Predefined set of site models
 
* '''Profile''' – Predefined set of site models
 
* '''Output name''' – Output name
 
* '''Output name''' – Output name
  
 
[[Category:Analyses]]
 
[[Category:Analyses]]
[[Category:BSA (analyses group)]]
+
[[Category:TF binding site search (analyses group)]]
 
[[Category:ISB analyses]]
 
[[Category:ISB analyses]]
 
[[Category:Autogenerated pages]]
 
[[Category:Autogenerated pages]]

Latest revision as of 18:15, 9 December 2020

Analysis title
TF-binding-site-search-Site-search-on-track-icon.png Site search on track
Provider
Institute of Systems Biology
Class
SiteSearchAnalysis
Plugin
ru.biosoft.bsa (Bio-sequences analyses plugin)

[edit] Description

Predict transcription factor binding sites.

[edit] Parameters:

  • Track – Filtering track
  • Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
  • Sequences collection – Collection of sequences
  • Profile – Predefined set of site models
  • Output name – Output name
Personal tools
Namespaces

Variants
Actions
BioUML platform
Community
Modelling
Analysis & Workflows
Collaborative research
Development
Virtual biology
Wiki
Toolbox