Difference between revisions of "Site search on track (analysis)"

Latest revision as of 18:15, 9 December 2020

Predict transcription factor binding sites.

Track – Filtering track
Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
Sequences collection – Collection of sequences
Profile – Predefined set of site models
Output name – Output name

@@ Line 1: / Line 1: @@
-Predict transcription factor binding sites
+;Analysis title
+:[[File:TF-binding-site-search-Site-search-on-track-icon.png]] Site search on track
+;Provider
+:[[Institute of Systems Biology]]
+;Class
+:{{Class|ru.biosoft.bsa.analysis.SiteSearchAnalysis}}
+;Plugin
+:[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]]
+==== Description ====
+Predict transcription factor binding sites.
 ==== Parameters: ====
+* '''Track''' – Filtering track
 * '''Sequences source''' – Select database to get sequences from or <nowiki>'</nowiki>Custom<nowiki>'</nowiki> to specify sequences location manually
 * '''Sequences collection''' – Collection of sequences
-* '''Track''' – Filtering track
+* '''Profile''' – Predefined set of site models
-* '''Profile''' – Predefined set of weight matrices
 * '''Output name''' – Output name
 [[Category:Analyses]]
-[[Category:BSA (analyses group)]]
+[[Category:TF binding site search (analyses group)]]
+[[Category:ISB analyses]]
 [[Category:Autogenerated pages]]