Difference between revisions of "Site search on track (analysis)"

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Predict transcription factor binding sites
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;Analysis title
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:[[File:TF-binding-site-search-Site-search-on-track-icon.png]] Site search on track
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;Provider
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:[[Institute of Systems Biology]]
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;Class
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:{{Class|ru.biosoft.bsa.analysis.SiteSearchAnalysis}}
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;Plugin
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:[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]]
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==== Description ====
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Predict transcription factor binding sites.
  
 
==== Parameters: ====
 
==== Parameters: ====
  
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* '''Track''' – Filtering track
 
* '''Sequences source''' – Select database to get sequences from or <nowiki>'</nowiki>Custom<nowiki>'</nowiki> to specify sequences location manually
 
* '''Sequences source''' – Select database to get sequences from or <nowiki>'</nowiki>Custom<nowiki>'</nowiki> to specify sequences location manually
 
* '''Sequences collection''' – Collection of sequences
 
* '''Sequences collection''' – Collection of sequences
* '''Track''' – Filtering track
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* '''Profile''' – Predefined set of site models
* '''Profile''' – Predefined set of weight matrices
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* '''Output name''' – Output name
 
* '''Output name''' – Output name
  
 
[[Category:Analyses]]
 
[[Category:Analyses]]
[[Category:BSA (analyses group)]]
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[[Category:TF binding site search (analyses group)]]
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[[Category:ISB analyses]]
 
[[Category:Autogenerated pages]]
 
[[Category:Autogenerated pages]]

Latest revision as of 18:15, 9 December 2020

Analysis title
TF-binding-site-search-Site-search-on-track-icon.png Site search on track
Provider
Institute of Systems Biology
Class
SiteSearchAnalysis
Plugin
ru.biosoft.bsa (Bio-sequences analyses plugin)

[edit] Description

Predict transcription factor binding sites.

[edit] Parameters:

  • Track – Filtering track
  • Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
  • Sequences collection – Collection of sequences
  • Profile – Predefined set of site models
  • Output name – Output name
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