Difference between revisions of "Site search on track (analysis)"
From BioUML platform
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;Analysis title | ;Analysis title | ||
| − | :[[File: | + | :[[File:TF-binding-site-search-Site-search-on-track-icon.png]] Site search on track |
;Provider | ;Provider | ||
:[[Institute of Systems Biology]] | :[[Institute of Systems Biology]] | ||
| + | ;Class | ||
| + | :{{Class|ru.biosoft.bsa.analysis.SiteSearchAnalysis}} | ||
;Plugin | ;Plugin | ||
:[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]] | :[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]] | ||
==== Description ==== | ==== Description ==== | ||
| − | Predict transcription factor binding sites | + | Predict transcription factor binding sites. |
==== Parameters: ==== | ==== Parameters: ==== | ||
| + | * '''Track''' – Filtering track | ||
* '''Sequences source''' – Select database to get sequences from or <nowiki>'</nowiki>Custom<nowiki>'</nowiki> to specify sequences location manually | * '''Sequences source''' – Select database to get sequences from or <nowiki>'</nowiki>Custom<nowiki>'</nowiki> to specify sequences location manually | ||
* '''Sequences collection''' – Collection of sequences | * '''Sequences collection''' – Collection of sequences | ||
| − | + | * '''Profile''' – Predefined set of site models | |
| − | * '''Profile''' – Predefined set of | + | |
* '''Output name''' – Output name | * '''Output name''' – Output name | ||
[[Category:Analyses]] | [[Category:Analyses]] | ||
| − | [[Category: | + | [[Category:TF binding site search (analyses group)]] |
[[Category:ISB analyses]] | [[Category:ISB analyses]] | ||
[[Category:Autogenerated pages]] | [[Category:Autogenerated pages]] | ||
Latest revision as of 18:15, 9 December 2020
- Analysis title
Site search on track
- Provider
- Institute of Systems Biology
- Class
SiteSearchAnalysis- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
[edit] Description
Predict transcription factor binding sites.
[edit] Parameters:
- Track – Filtering track
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequences collection – Collection of sequences
- Profile – Predefined set of site models
- Output name – Output name
