Difference between revisions of "Simulation analysis"

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(Automatic synchronization with BioUML)
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* '''Simulation engine name''' – Simulation engine name.
 
* '''Simulation engine name''' – Simulation engine name.
 
* '''Simulation engine''' – Simulation engine
 
* '''Simulation engine''' – Simulation engine
** '''Initial time''' – Initial time.
 
** '''Completion time''' – Completion time.
 
** '''Time increment''' – Time increment.
 
** '''Flat similar submodels''' – Flat submodels if possible.
 
** '''Main engine''' – Main simulation engine.
 
*** '''engineName''' – engineName
 
*** '''initialTime''' – initialTime
 
*** '''completionTime''' – completionTime
 
*** '''timeIncrement''' – timeIncrement
 
*** '''Time scale''' – Time description.
 
*** '''solverName''' – solverName
 
*** '''simulatorOptions''' – simulatorOptions
 
**** '''Absolute tolerance''' – Absolute tolerance.
 
**** '''Relative tolerance''' – Relative tolerance.
 
**** '''Statistics mode''' – Statistics mode.
 
**** '''Integration method''' – Integration method (ADAMS or BDF)
 
**** '''Inner linear solver type''' – Inner linear solver type
 
**** '''Jacobian approximation type''' – Jacobian approximation type
 
**** '''Steps limit''' – Limitation for solver steps count
 
**** '''Minimum time step''' – Minimum time step.
 
**** '''Maximum time step inverted''' – 1 / maximum time step.
 
**** '''Mu''' – Upper bandwidth of Banded Jacobian
 
**** '''Ml''' – Lower bandwidth of Banded Jacobian
 
**** '''Detect incorrect numbers (NaNs and Infs''' – If true then simulation will end when NaN or Infinity encountered
 
** '''Simulation engines''' – Agent engines.
 
 
* '''Skip points''' (expert) – Number of points to skip
 
* '''Skip points''' (expert) – Number of points to skip
 
* '''Output start time''' (expert) – Output start time for non-uniform simulation
 
* '''Output start time''' (expert) – Output start time for non-uniform simulation

Revision as of 16:34, 12 March 2019

Analysis title
Simulation-Simulation-analysis-icon.png Simulation analysis
Provider
Institute of Systems Biology
Class
SimulationAnalysis
Plugin
biouml.plugins.simulation (Simulation plug-in)

Description

Simulate model

Parameters:

  • Model – Diagram with simulation model
  • Simulation engine name – Simulation engine name.
  • Simulation engine – Simulation engine
  • Skip points (expert) – Number of points to skip
  • Output start time (expert) – Output start time for non-uniform simulation
  • Simulation result – Path to simulation result
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