Sequence mappability (analysis)

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Analysis title
Default-analysis-icon.png Sequence mappability
Provider
Institute of Systems Biology
Class
SequenceMappability
Plugin
biouml.plugins.riboseq (RiboSeq Experiment)

Description

Compute sequence mappability

Parameters:

  • inputTrack – inputTrack
  • Properties for track import – Properties for track import
    • Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
    • Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
  • maxAlignsPerRead – maxAlignsPerRead
  • minReadLength – minReadLength
  • maxReadLength – maxReadLength
  • outputTable – outputTable
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