Difference between revisions of "Sequence mappability (analysis)"

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==== Description ====
 
==== Description ====
Compute sequence mappability
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Compute sequence mappability.
  
 
==== Parameters: ====
 
==== Parameters: ====
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[[Category:Analyses]]
 
[[Category:Analyses]]
[[Category:RiboSeq (analyses group)]]
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[[Category:Sequence mappability (analyses group)]]
 
[[Category:ISB analyses]]
 
[[Category:ISB analyses]]
 
[[Category:Autogenerated pages]]
 
[[Category:Autogenerated pages]]

Latest revision as of 18:15, 9 December 2020

Analysis title
Default-analysis-icon.png Sequence mappability
Provider
Institute of Systems Biology
Class
SequenceMappability
Plugin
biouml.plugins.riboseq (RiboSeq Experiment)

[edit] Description

Compute sequence mappability.

[edit] Parameters:

  • inputTrack – inputTrack
  • Properties for track import – Properties for track import
    • Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
    • Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
  • maxAlignsPerRead – maxAlignsPerRead
  • minReadLength – minReadLength
  • maxReadLength – maxReadLength
  • outputTable – outputTable
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