Ribo-Seq and mRNA features forming (analysis)

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Analysis title
Default-analysis-icon.png Ribo-Seq and mRNA features forming
Provider
Institute of Systems Biology
Class
RiboSeqAndMrnaFeaturesForming
Plugin
biouml.plugins.bindingregions (Binding-regions related analyses)

Description

Create data matrix with Ribo-Seq and mRNA features and write it as TableDataCollection

Parameters:

  • Ribo-Seq data set name – Select Ribo-Seq data set
  • Path to folder with data sets – Path to folder with data sets
  • Sequences collection – Select a source of nucleotide sequences
    • Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
    • Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
  • Input track – Path to domestic track with Ribo-Seq dataset
  • Minimal reads number threshold – Peaks for which number of reads exeeds this threshold will be analized
  • Start codon type – Start codon type
  • mRNA and Ribo-Seq features – Select mRNA and Ribo-Seq features
  • Do exclude missing data? – Do exclude missing data? (If 'no' then possible missing data will be included as NaN-values
  • Output table path – Path to the output table
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