Read counter (analysis)

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Analysis title
RNA-seq-Read-counter-icon.png Read counter
Provider
Institute of Systems Biology
Class
ReadCounter
Plugin
biouml.plugins.ensembl (Support for Ensembl database and Ensembl-specific analyses)

Description

Count reads that overlap with specified genes and output a table with genes and respective read counts.

Parameters:

  • Track with reads – Track with reads
  • Genes – Table with genes to map reads
  • Ensembl version – Ensembl version to take gene track from
  • Output table – Output table with genes and read counts
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