Difference between revisions of "ROC curves for best sites union (analysis)"

From BioUML platform
Jump to: navigation, search
m (Protected "ROC curves for best sites union (analysis)": Autogenerated page (‎[edit=sysop] (indefinite)))
(Automatic synchronization with BioUML)
Line 13: Line 13:
 
==== Parameters: ====
 
==== Parameters: ====
  
 +
* '''Input track''' – Select input peaks track (must be the result of MACS or SISSRs analysis)
 
* '''Sequences collection''' – Select a source of nucleotide sequences
 
* '''Sequences collection''' – Select a source of nucleotide sequences
 
** '''Sequences source''' – Select database to get sequences from or <nowiki>'</nowiki>Custom<nowiki>'</nowiki> to specify sequences location manually
 
** '''Sequences source''' – Select database to get sequences from or <nowiki>'</nowiki>Custom<nowiki>'</nowiki> to specify sequences location manually
 
** '''Sequence collection''' – Specify path to folder containing sequences if <nowiki>'</nowiki>Custom<nowiki>'</nowiki> sequences source is selected
 
** '''Sequence collection''' – Specify path to folder containing sequences if <nowiki>'</nowiki>Custom<nowiki>'</nowiki> sequences source is selected
* '''Input track''' – Select input peaks track (must be the result of MACS or SISSRs analysis)
 
 
* '''Is around summit''' – Is around summit
 
* '''Is around summit''' – Is around summit
 
* '''Minimal region length''' – Minimal length of sequence region
 
* '''Minimal region length''' – Minimal length of sequence region

Revision as of 18:39, 16 July 2013

Analysis title
Default-analysis-icon.png ROC curves for best sites union
Provider
Institute of Systems Biology
Class
BestSitesUnionROCCurves
Plugin
biouml.plugins.bindingregions (Binding-regions related analyses)

Description

Best sites: ROC-curves; union of best sites in single chip-seq track; summit(yes/no); filtration (yes/no); matrix derivation.

Parameters:

  • Input track – Select input peaks track (must be the result of MACS or SISSRs analysis)
  • Sequences collection – Select a source of nucleotide sequences
    • Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
    • Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
  • Is around summit – Is around summit
  • Minimal region length – Minimal length of sequence region
  • % of best sites – Best sites percentage
  • Matrix – Path to positional weight matrix
  • Filtration matrix – Path to filtration matrix
  • Path to output folder – Output folder will be created under this location
Personal tools
Namespaces

Variants
Actions
BioUML platform
Community
Modelling
Analysis & Workflows
Collaborative research
Development
Virtual biology
Wiki
Toolbox