Difference between revisions of "ROC-curves in clusterized peaks (analysis)"

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* '''Types of site models''' – Select site models for comparative analysis
 
* '''Types of site models''' – Select site models for comparative analysis
 
* '''Matrix''' – Path to positional weight matrix
 
* '''Matrix''' – Path to positional weight matrix
* '''Path to output folder''' – Output folder will be created under this location
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* '''Path to output folder''' – Output folder will be created under this location when it doesn<nowiki>'</nowiki>t exist
  
 
[[Category:Analyses]]
 
[[Category:Analyses]]

Revision as of 12:20, 25 August 2015

Analysis title
Default-analysis-icon.png ROC-curves in clusterized peaks
Provider
Institute of Systems Biology
Class
ROCCurvesInClusterizedPeaks
Plugin
biouml.plugins.bindingregions (Binding-regions related analyses)

Description

ROC-curves in clusterized peaks

Parameters:

  • Sequences collection – Select a source of nucleotide sequences
    • Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
    • Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
  • Input track – Select input ChIP-seq track (must be the result of MACS or SISSRs analysis)
  • Is around summit – Is around summit
  • Minimal region length – Minimal length of sequence region
  • Type of data transformation – Type of data transformation
  • Do add numbers of overlaps – Do add numbers of overlaps to the set of peak characteristics?
  • Number of clusters – Number of clusters
  • Types of site models – Select site models for comparative analysis
  • Matrix – Path to positional weight matrix
  • Path to output folder – Output folder will be created under this location when it doesn't exist
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