Difference between revisions of "Quantification of RNA-seq with Cufflinks for multiple BAM files (workflow)"
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Revision as of 16:19, 11 December 2014
- Workflow title
- Quantification of RNA-seq with Cufflinks for multiple BAM files
- Provider
- geneXplain GmbH
Workflow overview
Parameters
- Input folder
- Input folder with multiple BAM files
- Sequence source
- Select species, genome build and Genecode version of GTF file
- Result folder
- Temporal folder to store Cufflinks results (will be created if not exists yet)
- CountsFolder
- Temporal folder to store information about transcript counts
- FPKMfolder
- Output folder for gene transcript counts in FPKM (Fragments Per Kilobase of transcript per Million mapped reads)
