Quality control analysis

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Analysis title
Default-analysis-icon.png Quality control analysis
Provider
Institute of Systems Biology
Class
QualityControlAnalysis
Plugin
biouml.plugins.gtrd (GTRD)

Description

Calculation of quality control metrics for assessing tracks from GTRD and AUCs-applications.

Parameters:

  • Data Type – Select data Type
  • Type of combined peaks – Type of combined peaks
  • Minimal length of binding region – Minimal length of binding region
  • Maximal length of binding region – Maximal length of binding region
  • FPCM threshold – FPCM threshold
  • Do calculate AUCs – Do calculate AUCs
  • Path to folder with site models – Path to folder with site models
  • Site model name – Please, select site model name
  • Sequences collection – Select a source of nucleotide sequences
    • Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
    • Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
  • Parameters for case of several folders – Please, determine parameters for case of several folders
    • Paths to data sets – Paths to data sets
  • Parameters for case of single folder – Please, determine parameters for case of single folder
    • Path to folder with files or tracks – Path to folder with bed-files or tracks
    • File names – Select file names
  • Path to output folder – Path to output folder
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