Difference between revisions of "Quality control analysis"

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m (Protected "Quality control analysis": Autogenerated page (‎[edit=sysop] (indefinite)))
(Automatic synchronization with BioUML)
 
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==== Description ====
 
==== Description ====
Calculation of quality control metrics for assessing tracks from GTRD and AUCs-applications
+
Calculation of quality control metrics for assessing tracks from GTRD and AUCs-applications.
  
 
==== Parameters: ====
 
==== Parameters: ====
  
 
* '''Data Type''' – Select data Type
 
* '''Data Type''' – Select data Type
 +
* '''Type of combined peaks''' – Type of combined peaks
 
* '''Minimal length of binding region''' – Minimal length of binding region
 
* '''Minimal length of binding region''' – Minimal length of binding region
 
* '''Maximal length of binding region''' – Maximal length of binding region
 
* '''Maximal length of binding region''' – Maximal length of binding region
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[[Category:Analyses]]
 
[[Category:Analyses]]
[[Category:GTRD (analyses group)]]
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[[Category:ChIP-seq (analyses group)]]
 
[[Category:ISB analyses]]
 
[[Category:ISB analyses]]
 
[[Category:Autogenerated pages]]
 
[[Category:Autogenerated pages]]

Latest revision as of 18:14, 9 December 2020

Analysis title
Default-analysis-icon.png Quality control analysis
Provider
Institute of Systems Biology
Class
QualityControlAnalysis
Plugin
biouml.plugins.gtrd (GTRD)

[edit] Description

Calculation of quality control metrics for assessing tracks from GTRD and AUCs-applications.

[edit] Parameters:

  • Data Type – Select data Type
  • Type of combined peaks – Type of combined peaks
  • Minimal length of binding region – Minimal length of binding region
  • Maximal length of binding region – Maximal length of binding region
  • FPCM threshold – FPCM threshold
  • Do calculate AUCs – Do calculate AUCs
  • Path to folder with site models – Path to folder with site models
  • Site model name – Please, select site model name
  • Sequences collection – Select a source of nucleotide sequences
    • Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
    • Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
  • Parameters for case of several folders – Please, determine parameters for case of several folders
    • Paths to data sets – Paths to data sets
  • Parameters for case of single folder – Please, determine parameters for case of single folder
    • Path to folder with files or tracks – Path to folder with bed-files or tracks
    • File names – Select file names
  • Path to output folder – Path to output folder
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