Process track with sites (analysis)

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Analysis title
Operations-with-genomic-tracks-Process-track-with-sites-icon.png Process track with sites
Provider
Institute of Systems Biology
Class
ProcessTrack
Plugin
ru.biosoft.bsa (Bio-sequences analyses plugin)

Description

This analysis enlarges/shrinks sites on the track, merges overlapping sites or removes too short sites.

Parameters:

  • Source track – Track you want to process
  • Sequences – Sequences to use
  • Shrink sites to zero length? – When shrink mode is selected, the sites are shrinked to zero length before further processing
  • Enlarge sites at start – Use positive numbers to enlarge and negative to shrink
  • Enlarge sites at end – Use positive numbers to enlarge and negative to shrink
  • Merge overlapping – Merges overlapping sites into a single site. Site annotations will be lost!
  • Remove small sites – If checked, sites smaller then 'Minimal site size' will be removed, otherwise they will be expanded to 'Minimal site size'
  • Minimal site size – Sites shorter than specified size will be removed from output
  • Output track – Path for processed track
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