Difference between revisions of "Process track with sites (analysis)"

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;Analysis title
 
;Analysis title
:Process track with sites
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:[[File:Operations-with-genomic-tracks-Process-track-with-sites-icon.png]] Process track with sites
 
;Provider
 
;Provider
 
:[[Institute of Systems Biology]]
 
:[[Institute of Systems Biology]]
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;Class
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:{{Class|ru.biosoft.bsa.analysis.ProcessTrack}}
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;Plugin
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:[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]]
  
 
==== Description ====
 
==== Description ====
This analysis allows you to enlarge/shrink sites on the track, merge overlapping sites or remove too short sites
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This analysis enlarges/shrinks sites on the track, merges overlapping sites or removes too short sites.
  
 
==== Parameters: ====
 
==== Parameters: ====
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* '''Source track''' – Track you want to process
 
* '''Source track''' – Track you want to process
 
* '''Sequences''' – Sequences to use
 
* '''Sequences''' – Sequences to use
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* '''Shrink sites to zero length?''' – When shrink mode is selected, the sites are shrinked to zero length before further processing
 
* '''Enlarge sites at start''' – Use positive numbers to enlarge and negative to shrink
 
* '''Enlarge sites at start''' – Use positive numbers to enlarge and negative to shrink
 
* '''Enlarge sites at end''' – Use positive numbers to enlarge and negative to shrink
 
* '''Enlarge sites at end''' – Use positive numbers to enlarge and negative to shrink
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[[Category:Analyses]]
 
[[Category:Analyses]]
[[Category:BSA (analyses group)]]
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[[Category:Operations with genomic tracks (analyses group)]]
 
[[Category:ISB analyses]]
 
[[Category:ISB analyses]]
 
[[Category:Autogenerated pages]]
 
[[Category:Autogenerated pages]]

Latest revision as of 18:15, 9 December 2020

Analysis title
Operations-with-genomic-tracks-Process-track-with-sites-icon.png Process track with sites
Provider
Institute of Systems Biology
Class
ProcessTrack
Plugin
ru.biosoft.bsa (Bio-sequences analyses plugin)

[edit] Description

This analysis enlarges/shrinks sites on the track, merges overlapping sites or removes too short sites.

[edit] Parameters:

  • Source track – Track you want to process
  • Sequences – Sequences to use
  • Shrink sites to zero length? – When shrink mode is selected, the sites are shrinked to zero length before further processing
  • Enlarge sites at start – Use positive numbers to enlarge and negative to shrink
  • Enlarge sites at end – Use positive numbers to enlarge and negative to shrink
  • Merge overlapping – Merges overlapping sites into a single site. Site annotations will be lost!
  • Remove small sites – If checked, sites smaller then 'Minimal site size' will be removed, otherwise they will be expanded to 'Minimal site size'
  • Minimal site size – Sites shorter than specified size will be removed from output
  • Output track – Path for processed track
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