Difference between revisions of "Process track with sites (analysis)"
From BioUML platform
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==== Description ==== | ==== Description ==== | ||
| − | This analysis | + | This analysis enlarges/shrinks sites on the track, merges overlapping sites or removes too short sites |
==== Parameters: ==== | ==== Parameters: ==== | ||
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* '''Source track''' – Track you want to process | * '''Source track''' – Track you want to process | ||
* '''Sequences''' – Sequences to use | * '''Sequences''' – Sequences to use | ||
| + | * '''Shrink sites to zero length?''' – When shrink mode is selected, the sites are shrinked to zero length before further processing | ||
* '''Enlarge sites at start''' – Use positive numbers to enlarge and negative to shrink | * '''Enlarge sites at start''' – Use positive numbers to enlarge and negative to shrink | ||
* '''Enlarge sites at end''' – Use positive numbers to enlarge and negative to shrink | * '''Enlarge sites at end''' – Use positive numbers to enlarge and negative to shrink | ||
Revision as of 18:59, 13 February 2017
- Analysis title
Process track with sites
- Provider
- Institute of Systems Biology
- Class
ProcessTrack- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
Description
This analysis enlarges/shrinks sites on the track, merges overlapping sites or removes too short sites
Parameters:
- Source track – Track you want to process
- Sequences – Sequences to use
- Shrink sites to zero length? – When shrink mode is selected, the sites are shrinked to zero length before further processing
- Enlarge sites at start – Use positive numbers to enlarge and negative to shrink
- Enlarge sites at end – Use positive numbers to enlarge and negative to shrink
- Merge overlapping – Merges overlapping sites into a single site. Site annotations will be lost!
- Remove small sites – If checked, sites smaller then 'Minimal site size' will be removed, otherwise they will be expanded to 'Minimal site size'
- Minimal site size – Sites shorter than specified size will be removed from output
- Output track – Path for processed track
