Difference between revisions of "Process track with sites (analysis)"

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:[[Institute of Systems Biology]]
 
:[[Institute of Systems Biology]]
 
;Plugin
 
;Plugin
:ru.biosoft.bsa (Bio-sequences analyses plugin)
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:[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]]
  
 
==== Description ====
 
==== Description ====

Revision as of 10:50, 7 May 2013

Analysis title
BSA-Process-track-with-sites-icon.png Process track with sites
Provider
Institute of Systems Biology
Plugin
ru.biosoft.bsa (Bio-sequences analyses plugin)

Description

This analysis allows you to enlarge/shrink sites on the track, merge overlapping sites or remove too short sites

Parameters:

  • Source track – Track you want to process
  • Sequences – Sequences to use
  • Enlarge sites at start – Use positive numbers to enlarge and negative to shrink
  • Enlarge sites at end – Use positive numbers to enlarge and negative to shrink
  • Merge overlapping – Merges overlapping sites into a single site. Site annotations will be lost!
  • Remove small sites – If checked, sites smaller then 'Minimal site size' will be removed, otherwise they will be expanded to 'Minimal site size'
  • Minimal site size – Sites shorter than specified size will be removed from output
  • Output track – Path for processed track
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