Difference between revisions of "Prepare GTF annotation (analysis)"

From BioUML platform
Jump to: navigation, search
(Automatic synchronization with BioUML)
 
(Automatic synchronization with BioUML)
 
(2 intermediate revisions by one user not shown)
Line 1: Line 1:
 
;Analysis title
 
;Analysis title
:[[File:Default-analysis-icon.png]] Prepare GTF annotation
+
:[[File:RNA-seq-Prepare-GTF-annotation-icon.png]] Prepare GTF annotation
 
;Provider
 
;Provider
 
:[[Institute of Systems Biology]]
 
:[[Institute of Systems Biology]]
Line 9: Line 9:
  
 
==== Description ====
 
==== Description ====
Prepare GTF annotation file from Ensembl database, this GTF can be used by Cufflinks
+
Prepare GTF annotation file from Ensembl database, this GTF can be used by Cufflinks.
  
 
==== Parameters: ====
 
==== Parameters: ====
Line 19: Line 19:
  
 
[[Category:Analyses]]
 
[[Category:Analyses]]
[[Category:BSA (analyses group)]]
+
[[Category:RNA-seq (analyses group)]]
 
[[Category:ISB analyses]]
 
[[Category:ISB analyses]]
 
[[Category:Autogenerated pages]]
 
[[Category:Autogenerated pages]]

Latest revision as of 18:15, 9 December 2020

Analysis title
RNA-seq-Prepare-GTF-annotation-icon.png Prepare GTF annotation
Provider
Institute of Systems Biology
Class
PrepareGTFAnnotation
Plugin
biouml.plugins.ensembl (Support for Ensembl database and Ensembl-specific analyses)

[edit] Description

Prepare GTF annotation file from Ensembl database, this GTF can be used by Cufflinks.

[edit] Parameters:

  • Ensembl database – Ensembl database to use
  • TSS distance – Maximal distance between neighboring transcription start sites in cluster
  • TSS groups – Table describing TSS groups
  • Resulting annotation – Resulting annotation of genome in GTF format
Personal tools
Namespaces

Variants
Actions
BioUML platform
Community
Modelling
Analysis & Workflows
Collaborative research
Development
Virtual biology
Wiki
Toolbox