Difference between revisions of "Parameter identifiability (table) (analysis)"

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==== Description ====
 
==== Description ====
Parameter identifiability which uses tables as input
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Parameter identifiability which uses tables as input.
  
 
==== Parameters: ====
 
==== Parameters: ====
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[[Category:Analyses]]
 
[[Category:Analyses]]
[[Category:DAE models (analyses group)]]
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[[Category:Differential algebraic equations (analyses group)]]
 
[[Category:ISB analyses]]
 
[[Category:ISB analyses]]
 
[[Category:Autogenerated pages]]
 
[[Category:Autogenerated pages]]

Latest revision as of 18:14, 9 December 2020

Analysis title
Default-analysis-icon.png Parameter identifiability (table)
Provider
Institute of Systems Biology
Class
IdentifiabilityOnTableAnalysis
Plugin
biouml.plugins.optimization (Optimization plug-in)

[edit] Description

Parameter identifiability which uses tables as input.

[edit] Parameters:

  • Diagram – Path to input diagram
  • Parameters table – Table with list of parameters to check identifiability (must contain "Min", "Max", "Val" columns)
  • Observables table – Table with data about observables values and time
  • Time column – Name of the column with time values from the "Observbles table" (will search for "time" if not selected)
  • Maximum identifiability steps – Maximum number of steps during parameter identifiability testing (in one direction)
  • Maximal deviation – Maximal deviation from initial objective function value (delta)
  • Plot element type (expert) – Type of created result plot elements
  • Optimization method parameters – Optimization method parameters
    • Optimization method name – Name of optimization method to use
    • Number of iterations – Number of iterations during optimization
    • Populations size – Populations size
    • Calculation accuracy – Calculation accuracy
    • Grid length – Grid length
    • Grid width – Grid width
    • Number of particles – The total number of particles
  • Weight method (expert) – Method which will be used to evaluate weights for objective function
  • Weights table (expert) – Table with data about weights for observable values
  • Weight column (expert) – Name of the column with weights from the "Weights table" (will set weights to 1.0 if not selected)
  • Output path – Path to the output table
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