Difference between revisions of "Parameter identifiability (table) (analysis)"
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:[[Institute of Systems Biology]] | :[[Institute of Systems Biology]] | ||
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| − | :{{Class|biouml.plugins.optimization.analysis. | + | :{{Class|biouml.plugins.optimization.analysis.IdentifiabilityOnTableAnalysis}} |
;Plugin | ;Plugin | ||
:[[Biouml.plugins.optimization (plugin)|biouml.plugins.optimization (Optimization plug-in)]] | :[[Biouml.plugins.optimization (plugin)|biouml.plugins.optimization (Optimization plug-in)]] | ||
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* '''Observables table''' – Table with data about observables values and time | * '''Observables table''' – Table with data about observables values and time | ||
* '''Time column''' – Name of the column with time values from the "Observbles table" (will search for "time" if not selected) | * '''Time column''' – Name of the column with time values from the "Observbles table" (will search for "time" if not selected) | ||
| − | |||
* '''Maximum identifiability steps''' – Maximum number of steps during parameter identifiability testing (in one direction) | * '''Maximum identifiability steps''' – Maximum number of steps during parameter identifiability testing (in one direction) | ||
| − | * ''' | + | * '''Maximal deviation''' – Maximal deviation from initial objective function value (delta) |
| − | * ''' | + | * '''Plot element type''' (expert) – Type of created result plot elements |
* '''Optimization method parameters''' – Optimization method parameters | * '''Optimization method parameters''' – Optimization method parameters | ||
** '''Optimization method name''' – Name of optimization method to use | ** '''Optimization method name''' – Name of optimization method to use | ||
Revision as of 16:32, 12 March 2019
- Analysis title
Parameter identifiability (table)
- Provider
- Institute of Systems Biology
- Class
IdentifiabilityOnTableAnalysis- Plugin
- biouml.plugins.optimization (Optimization plug-in)
Description
Parameter identifiability which uses tables as input
Parameters:
- Diagram – Path to input diagram
- Parameters table – Table with list of parameters to check identifiability (must contain "Min", "Max", "Val" columns)
- Observables table – Table with data about observables values and time
- Time column – Name of the column with time values from the "Observbles table" (will search for "time" if not selected)
- Maximum identifiability steps – Maximum number of steps during parameter identifiability testing (in one direction)
- Maximal deviation – Maximal deviation from initial objective function value (delta)
- Plot element type (expert) – Type of created result plot elements
- Optimization method parameters – Optimization method parameters
- Optimization method name – Name of optimization method to use
- Number of iterations – Number of iterations during optimization
- Populations size – Populations size
- Calculation accuracy – Calculation accuracy
- Grid length – Grid length
- Grid width – Grid width
- Number of particles – The total number of particles
- Weight method (expert) – Method which will be used to evaluate weights for objective function
- Weights table (expert) – Table with data about weights for observable values
- Weight column (expert) – Name of the column with weights from the "Weights table" (will set weights to 1.0 if not selected)
- Output path – Path to the output table
