Difference between revisions of "Parameter identifiability (optimization) (analysis)"

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==== Description ====
 
==== Description ====
Parameter identifiability which uses optimization as input
+
Parameter identifiability which uses optimization as input.
  
 
==== Parameters: ====
 
==== Parameters: ====
  
* '''Optimization''' – Path to optimization data
+
* '''Optimization''' – A path to the optimization document.
* '''Experiment names''' (expert) Names of experiments to use (if empty all experiments will be used)
+
* '''Parameter values''' – A path to the table containing the fitted parameter values. If this path is skipped, the values stored in the optimization document will be used as the start values of the analysis.
* '''Step size''' – Value of default step size during parameter identifiability testing
+
* '''Parameters''' (expert) Parameters to check identifiability.
 
* '''Maximum identifiability steps''' – Maximum number of steps during parameter identifiability testing (in one direction)
 
* '''Maximum identifiability steps''' – Maximum number of steps during parameter identifiability testing (in one direction)
* '''Degrees of freedom''' – Number of degrees of freedom
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* '''Maximal deviation''' – Maximal deviation from initial objective function value (delta)
* '''Confidence level''' – Confidence level which is used to define confidence interval
+
* '''Save solutions''' – Should solutions found by the analysis be saved?
 +
* '''Plot element type''' (expert) – Type of created result plot elements
 
* '''Output path''' – Path to the output table
 
* '''Output path''' – Path to the output table
  
 
[[Category:Analyses]]
 
[[Category:Analyses]]
[[Category:DAE models (analyses group)]]
+
[[Category:Differential algebraic equations (analyses group)]]
 
[[Category:ISB analyses]]
 
[[Category:ISB analyses]]
 
[[Category:Autogenerated pages]]
 
[[Category:Autogenerated pages]]

Latest revision as of 18:14, 9 December 2020

Analysis title
Default-analysis-icon.png Parameter identifiability (optimization)
Provider
Institute of Systems Biology
Class
IdentifiabilityOnOptimizationAnalysis
Plugin
biouml.plugins.optimization (Optimization plug-in)

[edit] Description

Parameter identifiability which uses optimization as input.

[edit] Parameters:

  • Optimization – A path to the optimization document.
  • Parameter values – A path to the table containing the fitted parameter values. If this path is skipped, the values stored in the optimization document will be used as the start values of the analysis.
  • Parameters (expert) – Parameters to check identifiability.
  • Maximum identifiability steps – Maximum number of steps during parameter identifiability testing (in one direction)
  • Maximal deviation – Maximal deviation from initial objective function value (delta)
  • Save solutions – Should solutions found by the analysis be saved?
  • Plot element type (expert) – Type of created result plot elements
  • Output path – Path to the output table
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