Difference between revisions of "Nonlinear Model (analysis)"

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(Default analysis icon as separate file)
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==== Description ====
 
==== Description ====
Nonlinear model of gene regulation
+
Nonlinear model of gene regulation.
  
 
==== Parameters: ====
 
==== Parameters: ====
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* '''Regulator list''' – Table with regulators ID
 
* '''Regulator list''' – Table with regulators ID
 
* '''Target list''' – Table with regulators ID
 
* '''Target list''' – Table with regulators ID
 +
* '''P-value threshold''' – Only results with a P-value below this threshold will appear in the output
 +
* '''Output table''' – Output table
 +
* '''Regulator smothing type''' – Smoothing type for regulator gene profile
 +
** '''Error''' – Spline error
 +
* '''Optimization method''' – Optimization method
 +
** '''Number of iterations''' – Number of iterations
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** '''Survival size''' – Survival size
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* '''Best regulator quantity''' – Number of best regulators for each target in output
  
 
[[Category:Analyses]]
 
[[Category:Analyses]]
[[Category:GeneModels (analyses group)]]
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[[Category:Gene models (analyses group)]]
 
[[Category:ISB analyses]]
 
[[Category:ISB analyses]]
 
[[Category:Autogenerated pages]]
 
[[Category:Autogenerated pages]]

Latest revision as of 18:15, 9 December 2020

Analysis title
Default-analysis-icon.png Nonlinear Model
Provider
Institute of Systems Biology
Class
NonLinearModelBuilding
Plugin
biouml.plugins.genemodels (Gene expression models building)

[edit] Description

Nonlinear model of gene regulation.

[edit] Parameters:

  • Number of experiments – Number of experiments
  • Experiments – Experiments
  • Regulator list – Table with regulators ID
  • Target list – Table with regulators ID
  • P-value threshold – Only results with a P-value below this threshold will appear in the output
  • Output table – Output table
  • Regulator smothing type – Smoothing type for regulator gene profile
    • Error – Spline error
  • Optimization method – Optimization method
    • Number of iterations – Number of iterations
    • Survival size – Survival size
  • Best regulator quantity – Number of best regulators for each target in output
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