Difference between revisions of "Nonlinear Model (analysis)"

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(Automatic synchronization with BioUML)
(Automatic synchronization with BioUML)
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* '''Output table''' – Output table
 
* '''Output table''' – Output table
 
* '''Regulator smothing type''' – Smoothing type for regulator gene profile
 
* '''Regulator smothing type''' – Smoothing type for regulator gene profile
** '''class''' – class
+
** '''Error''' – Spline error
** '''nameInParent''' – nameInParent
+
** '''notificationEnabled''' – notificationEnabled
+
** '''parameter''' – parameter
+
** '''propagationEnabled''' – propagationEnabled
+
** '''type''' – type
+
** '''typeAsString''' – typeAsString
+
 
* '''Optimization method''' – Optimization method
 
* '''Optimization method''' – Optimization method
** '''class''' – class
+
** '''Number of iterations''' – Number of iterations
** '''delta''' – delta
+
** '''Survival size''' – Survival size
** '''nameInParent''' – nameInParent
+
** '''notificationEnabled''' – notificationEnabled
+
** '''numOfIterations''' – numOfIterations
+
** '''propagationEnabled''' – propagationEnabled
+
** '''survivalSize''' – survivalSize
+
** '''type''' – type
+
** '''typeAsString''' – typeAsString
+
 
* '''Best regulator quantity''' – Number of best regulators for each target in output
 
* '''Best regulator quantity''' – Number of best regulators for each target in output
  

Revision as of 12:20, 25 August 2015

Analysis title
Default-analysis-icon.png Nonlinear Model
Provider
Institute of Systems Biology
Class
NonLinearModelBuilding
Plugin
biouml.plugins.genemodels (Gene expression models building)

Description

Nonlinear model of gene regulation

Parameters:

  • Number of experiments – Number of experiments
  • Experiments – Experiments
  • Regulator list – Table with regulators ID
  • Target list – Table with regulators ID
  • P-value threshold – Only results with a P-value below this threshold will appear in the output
  • Output table – Output table
  • Regulator smothing type – Smoothing type for regulator gene profile
    • Error – Spline error
  • Optimization method – Optimization method
    • Number of iterations – Number of iterations
    • Survival size – Survival size
  • Best regulator quantity – Number of best regulators for each target in output
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