MicroRNA aligner (analysis)

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Revision as of 18:38, 16 July 2013 by BioUML wiki Bot (Talk | contribs)

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Analysis title
Default-analysis-icon.png MicroRNA aligner
Provider
Institute of Systems Biology
Class
MicroRNAAligner
Plugin
ru.biosoft.bsa (Bio-sequences analyses plugin)

Description

Aligns NGS reads to microRNA

Parameters:

  • Input type – Type of input files
  • csfasta – csfasta
  • qualities – qualities
  • fastq – fastq
  • miRNASequences – miRNASequences
  • adapter – adapter
  • matchScore – matchScore
  • mismatchPenalty – mismatchPenalty
  • gapPenalty – gapPenalty
  • alignmentScoreThreshold – alignmentScoreThreshold
  • threadCount – threadCount
  • unmapped – unmapped
  • alignment – alignment
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