Difference between revisions of "Heterozygous site caller (analysis)"

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;Analysis title
 
;Analysis title
:[[File:BSA-Heterozygous-site-caller-icon.png]] Heterozygous site caller
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:[[File:Default-analysis-icon.png]] Heterozygous site caller
 
;Provider
 
;Provider
 
:[[Institute of Systems Biology]]
 
:[[Institute of Systems Biology]]
 +
;Class
 +
:{{Class|ru.biosoft.bsa.analysis.HeterozygousSiteCaller}}
 
;Plugin
 
;Plugin
:ru.biosoft.bsa (Bio-sequences analyses plugin)
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:[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]]
  
 
==== Description ====
 
==== Description ====
Find heterozygous sites from RNA-seq data
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Find heterozygous sites from RNA-seq data.
  
 
==== Parameters: ====
 
==== Parameters: ====
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[[Category:Analyses]]
 
[[Category:Analyses]]
[[Category:BSA (analyses group)]]
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[[Category:Mutations (analyses group)]]
 
[[Category:ISB analyses]]
 
[[Category:ISB analyses]]
 
[[Category:Autogenerated pages]]
 
[[Category:Autogenerated pages]]

Latest revision as of 18:15, 9 December 2020

Analysis title
Default-analysis-icon.png Heterozygous site caller
Provider
Institute of Systems Biology
Class
HeterozygousSiteCaller
Plugin
ru.biosoft.bsa (Bio-sequences analyses plugin)

[edit] Description

Find heterozygous sites from RNA-seq data.

[edit] Parameters:

  • Alignment track – BAM track with aligned reads
  • Target track – Restrict search to sites from this track
  • Min reads – Minimal number of reads at genomic position to be considered
  • Minimal fraction of second allele – Minimal fraction of second allele
  • Output track – Output track
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