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List of Hadoop applications for NGS

Hadoop MapReduce-based approaches have become increasingly popular due to their scalability in processing large sequencing data sets[1].

Tool, Ref Description URL
SeqPig [1] A library and a collection of tools to manipulate, analyze and query sequencing data sets in a scalable and simple manner.

SeqPig scripts use the Hadoop-based distributed scripting engine Apache Pig, which automatically parallelizes and distributes data processing tasks.

http://sourceforge.net/projects/seqpig/

http://seqpig.sourceforge.net/ (manual)


References

Error fetching PMID 24149054:
  1. Error fetching PMID 24149054: [Schumacher2013]
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