Gene set enrichment analysis - select a classification (Gene table) (workflow)

Workflow title

Gene set enrichment analysis - select a classification (Gene table)

Provider

geneXplain GmbH

Workflow overview

Description

This workflow performs Gene Set Enrichment Analysis for the input table of genes or proteins. It is designed to enable a comfortable selection of several input parameters in the input form, especially selection of an ontology.  Any ontology available with a given subscription can be chosen from the drop-down menu in the field Classification.

The Input table in the first step is converted to Ensembl Gene IDs, and in the next step an Ensembl gene table is submitted to Enrichment analysis using the ontology selected. 

The output contains the results of the enrichment analysis. For each ontological term several parameters are calculated, including nominal p-value, ES, NES, Rank at max, FDR, as well as hit names, the link to the corresponding ontological term, and the link to open a visualization plot.

Parameters

Input table

Enrichment weight column

Enter the name of the column from the Input table with numerical values

Species

Classification

Min number of hits to group

Results table