Difference between revisions of "Create Match model (analysis)"

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;Analysis title
 
;Analysis title
:[[File:BSA-Create-Match-model-icon.png]] Create Match model
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:[[File:Motif-discovery-Create-Match-model-icon.png]] Create Match model
 
;Provider
 
;Provider
 
:[[Institute of Systems Biology]]
 
:[[Institute of Systems Biology]]
 +
;Class
 +
:{{Class|ru.biosoft.bsa.analysis.createsitemodel.CreateMatchModel}}
 
;Plugin
 
;Plugin
:ru.biosoft.bsa (Bio-sequences analyses plugin)
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:[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]]
  
 
==== Description ====
 
==== Description ====
Creates Match site model
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Creates Match site model.
  
 
==== Parameters: ====
 
==== Parameters: ====
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[[Category:Analyses]]
 
[[Category:Analyses]]
[[Category:BSA (analyses group)]]
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[[Category:Motif discovery (analyses group)]]
 
[[Category:ISB analyses]]
 
[[Category:ISB analyses]]
 
[[Category:Autogenerated pages]]
 
[[Category:Autogenerated pages]]

Latest revision as of 18:15, 9 December 2020

Analysis title
Motif-discovery-Create-Match-model-icon.png Create Match model
Provider
Institute of Systems Biology
Class
CreateMatchModel
Plugin
ru.biosoft.bsa (Bio-sequences analyses plugin)

[edit] Description

Creates Match site model.

[edit] Parameters:

  • Position frequency matrix – Position frequency matrix
  • Cutoff – Cutoff for matrix
  • Core cutoff – Cutoff for matrix core
  • Default core – Automatically determine core start and length
  • Core start – Start of the matrix core (zero based)
  • Core length – Length of matrix core
  • Output collection – Collection where site model will be saved
  • Model name – The name of model name to create
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