Difference between revisions of "Create DAS track (analysis)"

From BioUML platform
Jump to: navigation, search
(Provider information added)
(Default analysis icon as separate file)
 
(9 intermediate revisions by one user not shown)
Line 1: Line 1:
 
;Analysis title
 
;Analysis title
:Create DAS track
+
:[[File:Default-analysis-icon.png]] Create DAS track
 
;Provider
 
;Provider
 
:[[Institute of Systems Biology]]
 
:[[Institute of Systems Biology]]
 +
;Class
 +
:{{Class|biouml.plugins.das.CreateDASTrackAnalysis}}
 +
;Plugin
 +
:[[Biouml.plugins.das (plugin)|biouml.plugins.das (Support for DAS(Distributed Annotation System) protocol)]]
  
 
==== Description ====
 
==== Description ====
Line 14: Line 18:
 
* '''Genome''' – Attach to genome
 
* '''Genome''' – Attach to genome
 
** '''Sequences source''' – Select database to get sequences from or <nowiki>'</nowiki>Custom<nowiki>'</nowiki> to specify sequences location manually
 
** '''Sequences source''' – Select database to get sequences from or <nowiki>'</nowiki>Custom<nowiki>'</nowiki> to specify sequences location manually
** '''Sequence collection''' – Sequence collection
+
** '''Sequence collection''' – Specify path to folder containing sequences if <nowiki>'</nowiki>Custom<nowiki>'</nowiki> sequences source is selected
 
** '''Genome ID string''' – Something like <nowiki>'</nowiki>hg18<nowiki>'</nowiki> or <nowiki>'</nowiki>mm6<nowiki>'</nowiki>
 
** '''Genome ID string''' – Something like <nowiki>'</nowiki>hg18<nowiki>'</nowiki> or <nowiki>'</nowiki>mm6<nowiki>'</nowiki>
 
* '''Output path''' – Where to store output
 
* '''Output path''' – Where to store output
Line 20: Line 24:
 
[[Category:Analyses]]
 
[[Category:Analyses]]
 
[[Category:DAS (analyses group)]]
 
[[Category:DAS (analyses group)]]
 +
[[Category:ISB analyses]]
 
[[Category:Autogenerated pages]]
 
[[Category:Autogenerated pages]]

Latest revision as of 18:07, 14 June 2013

Analysis title
Default-analysis-icon.png Create DAS track
Provider
Institute of Systems Biology
Class
CreateDASTrackAnalysis
Plugin
biouml.plugins.das (Support for DAS(Distributed Annotation System) protocol)

[edit] Description

Create DAS-server track and put into repository

[edit] Parameters:

  • DAS server URL – Base URL of DAS server
  • DAS source – Source name
  • DAS type – Type of the track
  • Genome – Attach to genome
    • Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
    • Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
    • Genome ID string – Something like 'hg18' or 'mm6'
  • Output path – Where to store output
Personal tools
Namespaces

Variants
Actions
BioUML platform
Community
Modelling
Analysis & Workflows
Collaborative research
Development
Virtual biology
Wiki
Toolbox