Difference between revisions of "Count olig frequencies (analysis)"

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(Automatic synchronization with BioUML)
 
(Automatic synchronization with BioUML)
 
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;Analysis title
 
;Analysis title
:[[File:Binding-regions-Count-olig-frequencies-icon.png]] Count olig frequencies
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:[[File:Default-analysis-icon.png]] Count olig frequencies
 
;Provider
 
;Provider
 
:[[Institute of Systems Biology]]
 
:[[Institute of Systems Biology]]
 
;Class
 
;Class
:{{Class|ru.biosoft.bsa.analysis.bindingRegions.CountOligoFrequencies}}
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:{{Class|biouml.plugins.bindingregions.analysis.CountOligoFrequencies}}
 
;Plugin
 
;Plugin
:[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]]
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:[[Biouml.plugins.bindingregions (plugin)|biouml.plugins.bindingregions (Binding-regions related analyses)]]
  
 
==== Description ====
 
==== Description ====
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==== Parameters: ====
 
==== Parameters: ====
  
* '''Input track''' – Select input ChIP-seq track (must be the result of <nowiki>'</nowiki>Merge binding regions for cell-lines<nowiki>'</nowiki> analysis)
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* '''Input track''' – Select input track (it has to contain the merged binding regions; it can be the result of <nowiki>'</nowiki>Merge binding regions for cell-lines<nowiki>'</nowiki> analysis)
* '''Length of oligs''' – Length of oligs
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* '''Length of oligs''' – Length of oligonucleotides
* '''Path to output folder''' – Output folder will be created under this location
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* '''Path to output folder''' – Output folder will be created under this location when it doesn<nowiki>'</nowiki>t exist
  
 
[[Category:Analyses]]
 
[[Category:Analyses]]

Latest revision as of 12:19, 25 August 2015

Analysis title
Default-analysis-icon.png Count olig frequencies
Provider
Institute of Systems Biology
Class
CountOligoFrequencies
Plugin
biouml.plugins.bindingregions (Binding-regions related analyses)

[edit] Description

Count olig frequencies in binding regions

[edit] Parameters:

  • Input track – Select input track (it has to contain the merged binding regions; it can be the result of 'Merge binding regions for cell-lines' analysis)
  • Length of oligs – Length of oligonucleotides
  • Path to output folder – Output folder will be created under this location when it doesn't exist
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