Difference between revisions of "Convert identifiers for multiple gene sets (workflow)"

From BioUML platform
Jump to: navigation, search
m (Protected "Convert identifiers for multiple gene sets (workflow)": Autogenerated page (‎[edit=sysop] (indefinite)))
(Automatic synchronization with BioUML)
 
Line 6: Line 6:
 
[[File:Convert-identifiers-for-multiple-gene-sets-workflow-overview.png|400px]]
 
[[File:Convert-identifiers-for-multiple-gene-sets-workflow-overview.png|400px]]
 
== Description ==
 
== Description ==
This workflow is designed to convert several gene or protein tables into a list with Ensembl IDs. The Input is a folder containing several gene or protein tables, and these tables are taken by the workflow, one input table after another.
+
This workflow is designed to convert several gene or protein tables into new gene tables with Ensembl IDs. The input is a folder containing several gene or protein tables, which needs to be converted.
  
The first input table is converted to a list with Ensembl IDs using ''Convert table'' analysis  and same step is repeated for the next input table, and several cycles are performed automatically corresponding to the number of tables in the input folder.
+
The first input table is converted to a list with Ensembl IDs using ''Convert table'' analysis and same step is repeated for the next input table. Several cycles are performed, automatically corresponding to the number of total tables in the input folder.
  
The output is a new folder with tables having Ensembl IDs  corresponding to each input table.
+
The output is a new folder with the new Ensembl tables.
  
 
 
 
 

Latest revision as of 16:34, 12 March 2019

Workflow title
Convert identifiers for multiple gene sets
Provider
geneXplain GmbH

[edit] Workflow overview

Convert-identifiers-for-multiple-gene-sets-workflow-overview.png

[edit] Description

This workflow is designed to convert several gene or protein tables into new gene tables with Ensembl IDs. The input is a folder containing several gene or protein tables, which needs to be converted.

The first input table is converted to a list with Ensembl IDs using Convert table analysis and same step is repeated for the next input table. Several cycles are performed, automatically corresponding to the number of total tables in the input folder.

The output is a new folder with the new Ensembl tables.

 

[edit] Parameters

Input folder
Folder to get input tables from
Species
output_file_format
Folder to store results (will be created if not exists yet)
Results folder
Folder to store results (will be created if not exists yet)
Personal tools
Namespaces

Variants
Actions
BioUML platform
Community
Modelling
Analysis & Workflows
Collaborative research
Development
Virtual biology
Wiki
Toolbox